Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00014 ATGGATCCTTCTAACTATAACAATCCTTCTTCTTCTTCTTTTTATTTTTCTTCTTCAACTTTCTCTTCAGCTTCCGCTAACACCAAGGCCCAGTCGCTTCAGCAGCGGAGGCTTACCAGGCAGAGGAGGCTTCGCGACCATGACGCTGCCTCCACCGACACCTGTTCCTTGCCGGCTTCTCCTCCCCCTTCTTTCAATAAGTCCTCCGACTCTCCTGCCCACCCTCTCCCCCTCCCGCGTCCTGACTCCCCGTTGACCCGCCGTCCGAAGTCAACTAGTCCCAAGTCCGGCCATCCTTTCTTTGCCACTTCTCGTATCAGAAAGAGTTTGGATCATGATGCAGCCAAAAATGTAAGATCTCCAAGCAATTTGCGTAGATCCTCTTTTGATCCCACCACCGAGAGTGCAAGATATGATTTAAGGGTCAATATACCATCTACAAGTACCCTCTTGTCTGGCAATGTTACATACAGAGATCCCCAAGAACACTCTCATGATAACTATTCTGACTTGAAACTGCATTATGCTGCTAAGAGTGCCCCAACAAGCATAATATCAAGTCCTGTTACTAGTCCTCGTAGGTCCAGCAATGGAGAGTTCTATGATCCTTTCATACATTTTACTCAAGAGTTCAATGAAACTTTGAAGGTATCACCCCCGAGAACACTTCATAGTCCGGACCTTTCTCCCCGTAGGGGCTGGAGTCTTTTCCACAATCCGAATAACATTCGAGAGGGATCTCGGCCTGAAAACAATGCACATCCATTACCCCTTCCTCCTAAGTCTCCATTGCCAGCTCAATCAACTATCATGCATCAAACTTCTGAAATTTCACCCTCAGTTAAGAAGGGTCCATGGCAGAAAGGGAAGCTCATTGGCCGTGGATCTTTTGGAAGTGTTTATCATGCTACCAACCTAGAAACGGGAGCATCTTGTGCAATGAAAGAGGTGGATCTGATTCATGATGATCCTAAGTCTGCTGATTCCTTAAAGCAATTAGAGCAGGAAATCAGAATTCTCCGTCAGCTACACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCACTTGTACATATATATGGAGTATGTTCATCCTGGATCCATTCATAAATTTATGCATGAAAATTGTGGAGCTATGACAGAGTCTGTTGTTCGCAATTTCACTCGCCATATTCTCTCTGGATTGGCATACTTACATAATACAAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTGATGCCTCTGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGAAGTCCCTACTGGATGGCTCCAGAGCTCATGATGGCTGCTATAAAGAAAAAATCAAATCCTGAGATTGCCATGGCCATTGACATATGGAGCTTGGGGTGCACAATCATCGAAATGCTGACCGGAAGACCTCCTTGGAGTGAGTTTGAAGGGCCTCAAGCAATGTTCAAGGTACTGCACAGATCCCCACCTATACCAGAAACACTATCTTCTGAGGGACAGGATTTCCTTCAGCAGTGTTTCAGAAGGAACCCCGCGGATCGACCGACAGCAGCAACCCTCCTTACACACGCCTTTGTACAAAATTTGCATGATCAAGATGTCCCAATTCATCCACAACCAGTCTATCATCCTAGAGAAGACCCAGGACCAAAAGAGAATACACGTAGACGCCATAGCCCAAAACACAATTCAAAAACTAGTCCTAGAAACTCCATTGGCTCCAGGATTATTAACAAGATTCAGAGTATAATCGGAAGTTAA 1824 0.4507 MDPSNYNNPSSSSFYFSSSTFSSASANTKAQSLQQRRLTRQRRLRDHDAASTDTCSLPASPPPSFNKSSDSPAHPLPLPRPDSPLTRRPKSTSPKSGHPFFATSRIRKSLDHDAAKNVRSPSNLRRSSFDPTTESARYDLRVNIPSTSTLLSGNVTYRDPQEHSHDNYSDLKLHYAAKSAPTSIISSPVTSPRRSSNGEFYDPFIHFTQEFNETLKVSPPRTLHSPDLSPRRGWSLFHNPNNIREGSRPENNAHPLPLPPKSPLPAQSTIMHQTSEISPSVKKGPWQKGKLIGRGSFGSVYHATNLETGASCAMKEVDLIHDDPKSADSLKQLEQEIRILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSIHKFMHENCGAMTESVVRNFTRHILSGLAYLHNTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAIKKKSNPEIAMAIDIWSLGCTIIEMLTGRPPWSEFEGPQAMFKVLHRSPPIPETLSSEGQDFLQQCFRRNPADRPTAATLLTHAFVQNLHDQDVPIHPQPVYHPREDPGPKENTRRRHSPKHNSKTSPRNSIGSRIINKIQSIIGS 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00014 607 ProSiteProfiles Protein kinase domain profile. 286 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271952g00014 607 MobiDBLite consensus disorder prediction 25 131 - -
Stsc271952g00014 607 MobiDBLite consensus disorder prediction 266 281 - -
Stsc271952g00014 607 SUPERFAMILY Protein kinase-like (PK-like) 267 593 IPR011009 -
Stsc271952g00014 607 SMART serkin_6 286 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271952g00014 607 Pfam Protein kinase domain 287 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271952g00014 607 FunFam Mitogen-activated protein kinase kinase kinase 5 283 586 - -
Stsc271952g00014 607 MobiDBLite consensus disorder prediction 105 119 - -
Stsc271952g00014 607 Gene3D Transferase(Phosphotransferase) domain 1 284 585 - -
Stsc271952g00014 607 MobiDBLite consensus disorder prediction 554 595 - -
Stsc271952g00014 607 ProSitePatterns Protein kinases ATP-binding region signature. 292 315 IPR017441 GO:0005524
Stsc271952g00014 607 MobiDBLite consensus disorder prediction 217 287 - -
Stsc271952g00014 607 MobiDBLite consensus disorder prediction 53 71 - -
Stsc271952g00014 607 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 18 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00014 Stsc-Chr271952 46603 50475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00014 218 549 MAP Kinase Kinase Kinase AT5G66850 62.798 1.80e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc271952g00014 Pkinase 1.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00014 - - lang:109327987 738.028