Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00013 ATGGATCCTTCTAACTATAACAATCCTTCTTCTTCTTCTTTTTATTTTTCTTCTTCAACTTTCTCTTCAGCTTCCGCTAACACCAAGGCCCAGTCGCTTCAGCAGCGGAGGCTTACCAGGCAGAGGAGGCTTCGCGACCATGACGCTGCCTCCACCGACACCTGTTCCTTGCCGGCTTCTCCTCCCCCTTCTTTCAATAAGTCCTCCGACTCTCCTGCCCACCCTCTCCCCCTCCCGCGTCCTGACTCCCCGTTGACCCGCCGTCCGAAGTCAACTAGTCCCAAGTCCGGCCATCCTTTCTTTGCCACTTCTCGAAAGAGTTTGGATCATGATGCAGCCAAAAATGTAAGATCTCCAAGCAATTTGCGTAGATCCTCTTTTGATCCCACCACCGAGAGTGCAAGATATGATTTAAGGGTCAATATACCATCTACAAGTACCCTCTTGTCTGGCAATGTTACATACAGAGATCCCCAAGAACACTCTCATGATAACTATTCTGACTTGAAACTGCATTATGCTGCTAAGAGTGCCCCAACAAGCATAATATCAAGTCCTGTTACTAGTCCTCGTAGGTCCAGCAATGGAGAGTTCTATGATCCTTTCATACATTTTACTCAAGAGTTCAATGAAACTTTGAAGGTATCACCCCCGAGAACACTTCATAGTCCGGACCTTTCTCCCCGTAGGGGCTGGAGTCTTTTCCACAATCCGAATAACATTCGAGAGGGATCTCGGCCTGAAAACAATGCACATCCATTACCCCTTCCTCCTAAGTCTCCATTGCCAGCTCAATCAACTATCATGCATCAAACTTCTGAAATTTCACCCTCAGTTAAGAAGGGTCCATGGCAGAAAGGGAAGCTCATTGGCCGTGGATCTTTTGGAAGTGTTTATCATGCTACCAACCTAGAAACGGGAGCATCTTGTGCAATGAAAGAGGTGGATCTGATTCATGATGATCCTAAGTCTGCTGATTCCTTAAAGCAATTAGAGCAGGAAATCAGAATTCTCCGTCAGCTACACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCACTTGTACATATATATGGAGTATGTTCATCCTGGATCCATTCATAAATTTATGCATGAAAATTGTGGAGCTATGACAGAGTCTGTTGTTCGCAATTTCACTCGCCATATTCTCTCTGGATTGGCATACTTACATAATACAAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTGATGCCTCTGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGAAGTCCCTACTGGATGGCTCCAGAGCTCATGATGGCTGCTATAAAGAAAAAATCAAATCCTGAGATTGCCATGGCCATTGACATATGGAGCTTGGGGTGCACAATCATCGAAATGCTGACCGGAAGACCTCCTTGGAGTGAGTTTGAAGGGCCTCAAGCAATGTTCAAGGTACTGCACAGATCCCCACCTATACCAGAAACACTATCTTCTGAGGGACAGGATTTCCTTCAGCAGTGTTTCAGAAGGAACCCCGCGGATCGACCGACAGCAGCAACCCTCCTTACACACGCCTTTGTACAAAATTTGCATGATCAAGATGTCCCAATTCATCCACAACCAGTCTATCATCCTAGAGAAGACCCAGGACCAAAAGAGAATACACGTAGACGCCATAGCCCAAAACACAATTCAAAAACTAGTCCTAGAAACTCCATTGGCTCCAGGATTATTAACAAGATTCAGAGTATAATCGGTGATACTTCGAAAAAATATGATAGTGATGAATGTAATCATAGTACATCTTCTGCTGACTCTCCTCGCTCCCTGACAGAAGTTAATGCTCGTCAATCTCCCCTGAAACCTTCTACACTCAACTTCATGTCTGTTGCACCATTCAAGGTTATCAAAATCATCAGACACATTTGA 1983 0.4468 MDPSNYNNPSSSSFYFSSSTFSSASANTKAQSLQQRRLTRQRRLRDHDAASTDTCSLPASPPPSFNKSSDSPAHPLPLPRPDSPLTRRPKSTSPKSGHPFFATSRKSLDHDAAKNVRSPSNLRRSSFDPTTESARYDLRVNIPSTSTLLSGNVTYRDPQEHSHDNYSDLKLHYAAKSAPTSIISSPVTSPRRSSNGEFYDPFIHFTQEFNETLKVSPPRTLHSPDLSPRRGWSLFHNPNNIREGSRPENNAHPLPLPPKSPLPAQSTIMHQTSEISPSVKKGPWQKGKLIGRGSFGSVYHATNLETGASCAMKEVDLIHDDPKSADSLKQLEQEIRILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSIHKFMHENCGAMTESVVRNFTRHILSGLAYLHNTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAIKKKSNPEIAMAIDIWSLGCTIIEMLTGRPPWSEFEGPQAMFKVLHRSPPIPETLSSEGQDFLQQCFRRNPADRPTAATLLTHAFVQNLHDQDVPIHPQPVYHPREDPGPKENTRRRHSPKHNSKTSPRNSIGSRIINKIQSIIGDTSKKYDSDECNHSTSSADSPRSLTEVNARQSPLKPSTLNFMSVAPFKVIKIIRHI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 617 635 - -
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 215 285 - -
Stsc271952g00013 660 FunFam Mitogen-activated protein kinase kinase kinase 5 281 584 - -
Stsc271952g00013 660 Gene3D Transferase(Phosphotransferase) domain 1 282 583 - -
Stsc271952g00013 660 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 18 557 - -
Stsc271952g00013 660 ProSitePatterns Protein kinases ATP-binding region signature. 290 313 IPR017441 GO:0005524
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 584 606 - -
Stsc271952g00013 660 SMART serkin_6 284 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 24 129 - -
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 264 279 - -
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 552 635 - -
Stsc271952g00013 660 SUPERFAMILY Protein kinase-like (PK-like) 265 592 IPR011009 -
Stsc271952g00013 660 Pfam Protein kinase domain 285 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 86 100 - -
Stsc271952g00013 660 ProSiteProfiles Protein kinase domain profile. 284 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271952g00013 660 MobiDBLite consensus disorder prediction 53 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00013 Stsc-Chr271952 46603 50475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00013 216 547 MAP Kinase Kinase Kinase AT5G66850 62.798 6.40e-148 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc271952g00013 Pkinase 2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00013 - - gmx:100781764 782.326