Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00010 ATGGAAGCAATGAATAATAGAAGCTCATCTTGCACGGCGTCTTCGTCGGACTCTTCTTCATCGGAGTCAACGCAAAGGAATAATAATCCGAGCAGGGCAGAGAGAATCAAAGGTCCATGGAGCGCAGAAGAAGATAGGATCCTCACACGCCTCGTCGAGAGATACGGGGCAAGAAACTGGTCTCTCATTAGTCGCTACATAAAGGGAAGGTCCGGCAAGTCCTGCAGGCTAAGATGGTGCAACCAGCTCAGCCCCACGGTGGAGCACCGTCCCTTCTCCTCCCACGAGGACGAAACCATCATCGCCGCCCATGCCCAGTACGGTAACAGATGGGCCACCATTGCGAGGTTATTACCCGGCCGAACCGATAATGCCGTTAAGAATCACTGGAACTCCACTCTCAAGCGAAAGGCTAGAGAACAACGCCGTACTGGTAGTGGTGGTGACGGTGCTCTTGCTTTGGCGGCAACGAATAATGAGAGAGGCTCGTGTTCTTCGGGGGCAGTGCCAGCTTGCGCGTTGCCGTTGGAGGATGATCCGTTGACCGCGTTGACTCTTGGTCCACCCGGGAGCGGTGCGGTGGAGGCGGAGCAACAGCGAGGGTCGCCGGAGACTAGTGTGGGTTCAGGGTTTTGGGATGTTATGAGAGATGTGATTGCGAGAGAAGTGAGGGAATATGTATCTTCAAATTTCTCTGACCATTCCAATTTTCATTGA 717 0.5356 MEAMNNRSSSCTASSSDSSSSESTQRNNNPSRAERIKGPWSAEEDRILTRLVERYGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSHEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRKAREQRRTGSGGDGALALAATNNERGSCSSGAVPACALPLEDDPLTALTLGPPGSGAVEAEQQRGSPETSVGSGFWDVMRDVIAREVREYVSSNFSDHSNFH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00010 238 Gene3D - 36 88 - -
Stsc271952g00010 238 CDD SANT 39 81 IPR001005 -
Stsc271952g00010 238 MobiDBLite consensus disorder prediction 182 208 - -
Stsc271952g00010 238 Gene3D - 90 148 - -
Stsc271952g00010 238 MobiDBLite consensus disorder prediction 1 34 - -
Stsc271952g00010 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 87 IPR017930 -
Stsc271952g00010 238 CDD SANT 91 134 IPR001005 -
Stsc271952g00010 238 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Stsc271952g00010 238 Pfam Myb-like DNA-binding domain 40 98 - -
Stsc271952g00010 238 PANTHER MYB PROTEIN-RELATED 37 166 - -
Stsc271952g00010 238 FunFam MYB transcription factor 37 88 - -
Stsc271952g00010 238 SMART sant 36 85 IPR001005 -
Stsc271952g00010 238 SMART sant 88 136 IPR001005 -
Stsc271952g00010 238 MobiDBLite consensus disorder prediction 1 38 - -
Stsc271952g00010 238 SUPERFAMILY Homeodomain-like 35 130 IPR009057 -
Stsc271952g00010 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 138 IPR017930 -
Stsc271952g00010 238 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00010 Stsc-Chr271952 39006 39961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00010 33 137 MYB Transcription Factor Family AT3G50060 79.048 3.08e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271952g00010 Myb_DNA-bind_6 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00010 - - lang:109327990 302.753