Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00001 ATGCAATCCAACGGCTCTGATTCGCACCAACACCAACAAACGGACCAGAATCAACGCCAACAGCACACGCCACCGCAGCCGCAGCCACTGCAACTCCCGCAGCAGTGGGTGCCGATGCAGTACCCAGCCACCGCCATGGTAATGCAGCACCCCATGCTGCCGCCTCAACATTACGCTCCGCCGCCACCCCAGCCCTACATGCCCTACCACCAGTACCAGCAGCAGCTCCCTCACGTTACCCCCCACCACTCCCATCAGCACCACGCTCAGGGATCCACCGCCGAGAACAAGACCATCTGGGTCGGAGATTTGTATCATTGGATGGACGAGAGTTATCTGCACGGCTGCTTTGCTTCCACCGGCGAGATTTCGTCCATCAAGGTTATTCGCAATAAGCAGACAGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGGCACAGCTGAGAAAGTTTTACAGAACTATGCTGGAATTTTGATGCCAAACACAGAGCAACCTTTCAGGCTGAACTGGGCAACGTTTAGCACAGGAGACAAGCGTTCAGACAATGTTCCAGACCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCCTCTTGCATGAGACTTTCTCTAGTAGATACCCTTCTGTTAAGGCTGCTAAAGTTGTTTTTGATGCCAACACTGGCCGCTCCAAGGGCTATGGTTTCGTCAGGTTTGGTGATGATAATGAAAGGTCTCAAGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGCCTATCAACAAGGAGGGCAATCAAATGGCACATCTAGCCAATCTGAAACTGATTCTACTAACACAACTATATTTGTTGGAGGACTGGACCCTAATGTTACAGCTGAAGATCTTAAGCATCCATTCTCCCTGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGTTGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGAGTATGATTGGCAAGCAAACAGTTCGTCTTTCATGGGGCCGAAATCCAGCAAATAAGCAGAATGGAGTTTGGGAATCCATGGAGTGGGGCATATTATGGGGCTCCTGTTTATGA 1170 0.4829 MQSNGSDSHQHQQTDQNQRQQHTPPQPQPLQLPQQWVPMQYPATAMVMQHPMLPPQHYAPPPPQPYMPYHQYQQQLPHVTPHHSHQHHAQGSTAENKTIWVGDLYHWMDESYLHGCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSAYQQGGQSNGTSSQSETDSTNTTIFVGGLDPNVTAEDLKHPFSLYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGSMIGKQTVRLSWGRNPANKQNGVWESMEWGILWGSCL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00001 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Stsc271952g00001 389 SUPERFAMILY RNA-binding domain, RBD 58 178 IPR035979 GO:0003676
Stsc271952g00001 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Stsc271952g00001 389 SMART rrm1_1 191 265 IPR000504 GO:0003723
Stsc271952g00001 389 SMART rrm1_1 296 363 IPR000504 GO:0003723
Stsc271952g00001 389 SMART rrm1_1 98 173 IPR000504 GO:0003723
Stsc271952g00001 389 MobiDBLite consensus disorder prediction 1 32 - -
Stsc271952g00001 389 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 88 371 - -
Stsc271952g00001 389 CDD RRM3_NGR1_NAM8_like 294 365 - -
Stsc271952g00001 389 Gene3D - 96 176 IPR012677 -
Stsc271952g00001 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Stsc271952g00001 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Stsc271952g00001 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Stsc271952g00001 389 FunFam Polyadenylate-binding protein RBP47B 96 176 - -
Stsc271952g00001 389 MobiDBLite consensus disorder prediction 270 297 - -
Stsc271952g00001 389 MobiDBLite consensus disorder prediction 267 297 - -
Stsc271952g00001 389 FunFam Polyadenylate-binding protein RBP47C isoform A 189 265 - -
Stsc271952g00001 389 FunFam Polyadenylate-binding protein RBP47 280 386 - -
Stsc271952g00001 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Stsc271952g00001 389 CDD RRM2_SECp43_like 189 268 - -
Stsc271952g00001 389 CDD RRM1_SECp43_like 98 178 - -
Stsc271952g00001 389 SUPERFAMILY RNA-binding domain, RBD 189 370 IPR035979 GO:0003676
Stsc271952g00001 389 MobiDBLite consensus disorder prediction 1 25 - -
Stsc271952g00001 389 Gene3D - 189 265 IPR012677 -
Stsc271952g00001 389 Gene3D - 272 375 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00001 Stsc-Chr271952 2751 6246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00001 191 360 Eukaryotic Initiation Factors Gene Family AT4G34110 32.571 6.54e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00001 - - gmx:100785454 565.844