Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271951g00016 ATGGGGGAAAGATTTGGGATATCCTCTGAATTTGCTGCCGGTAAAAAGAGGAAGCAGTTATACAATGGAAATAAGAAAAGTAAAAAGGCTAGAAAGGGAATAGACGACTCTTCAATTGAGTGTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGTTGCAGTCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGGACACCTATTCAAAATACTATCGATGATCTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAAGCAGTTCTGAGGGCCATTATGCTTCGTCGTACAAAAGGAACTTTGATTGATGGGAAGCCAATAATCAATTTACCTCCTAAAACGATTGAGCTGACTAAGGTGGATTTTTCCATTGAGGAGCGGGCCTTCTATATGAAGTTGGAAGCGGATTCACGTTCCCAATTTAAGGCATATGCTGCTGCTGGCACTGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGTCTTCGTCAAGCTTGTGATCATCCGCGTCTTGTTAAAGATTATTATTCTGATCCTCTTGGGAAATCCTCTCTGGAAATGGCAAACTCACTTCCAAAGGAGACGCTGATTAATCTGTTTAATAGTTTGGAAACAACCTTTGCTATATGCGGTGTTTGCGAGGATCCACCTGAAGACCCTGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGACTGCTTGACTGGTGATGATAATACATGCCCTGGTCTTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGTTTGTCTGATGAACTTCGTAGTAGTAATTCCATAAAAGCGAATGATTTTGATCATTCACTAGTGCAGCAGAGTGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCATTCAAATTGTAAACTAAATTCTGCTGGAAGCCATAAAGGTTCACCATCTTCTGATGATTCATATATTGAAGATCTCGACTCAGATGCTAGGATTATGAAACACACAAGAAAATATTCAGAGTCCACAACTGCAGGGCCAATAAAGGCTATAGTTTTTTCCCAATGGACTAGCATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCGGTATACAATACAGGAGACTTGATGGGAGGATGTCTCTGGTAGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCGCTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATCCTTTTGGATCTTTGGTGGAATCCGACAACTGAAGATCAGGCTATTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACACGGCTCACTGTAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATCCGCTTTTGGCGAAGACCATGCCGGCAGCTCCGCCACTCGCCTTACAATGGATGATCTGAAATATCTGTTCATGGTGTAG 1677 0.4097 MGERFGISSEFAAGKKRKQLYNGNKKSKKARKGIDDSSIECASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSIEERAFYMKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPLGKSSLEMANSLPKETLINLFNSLETTFAICGVCEDPPEDPVVTMCGHVFCYQCVSDCLTGDDNTCPGLGCKAALAEDVVFSKATLRSCLSDELRSSNSIKANDFDHSLVQQSEYSSSKIKAVLEILHSNCKLNSAGSHKGSPSSDDSYIEDLDSDARIMKHTRKYSESTTAGPIKAIVFSQWTSMLDLVEASLQQSGIQYRRLDGRMSLVARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEDHAGSSATRLTMDDLKYLFMV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271951g00016 558 CDD SF2_C_SNF 405 510 - -
Stsc271951g00016 558 ProSitePatterns Zinc finger RING-type signature. 275 284 IPR017907 -
Stsc271951g00016 558 Gene3D - 159 557 IPR027417 -
Stsc271951g00016 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 310 IPR013083 -
Stsc271951g00016 558 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 40 557 - -
Stsc271951g00016 558 SMART helicmild6 417 500 IPR001650 -
Stsc271951g00016 558 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 553 IPR001650 -
Stsc271951g00016 558 ProSiteProfiles Zinc finger RING-type profile. 260 296 IPR001841 -
Stsc271951g00016 558 Gene3D - 12 155 IPR038718 -
Stsc271951g00016 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 150 IPR027417 -
Stsc271951g00016 558 SUPERFAMILY RING/U-box 257 297 - -
Stsc271951g00016 558 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 24 156 - -
Stsc271951g00016 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 106 IPR014001 -
Stsc271951g00016 558 SMART ring_2 260 298 IPR001841 -
Stsc271951g00016 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 557 IPR027417 -
Stsc271951g00016 558 Pfam Zinc finger, C3HC4 type (RING finger) 260 296 IPR018957 GO:0046872
Stsc271951g00016 558 CDD DEXDc_SHPRH-like 28 144 - -
Stsc271951g00016 558 Pfam Helicase conserved C-terminal domain 404 500 IPR001650 -
Stsc271951g00016 558 Pfam SNF2-related domain 47 222 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271951g00016 Stsc-Chr271951 88230 92850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271951g00016 39 557 RAD5 or RAD16-like Gene Family AT1G61140 60.448 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc271951g00016 SNF2_N 4e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271951g00016 - - gmx:100795142 939.873