Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271951g00015 ATGGCGGTTACGATCTCAGCGCTGAACCTTCGGAGGAGCATGGCACTACTACGCCGGCGATCATCGTCGAAGCTTCTCCGTCGTTCTTCTTCCCATCTTCTTCTCCCTATTCCCATGCAGCATTGTTCAGCTCGAAAGCTTGAACTTGAAGGACTCCGTTTTTATGGTGGATGGTGGCCTAGGCATGATAGTTCTTCAACAGGGGAAAGTACTTCAAATGCTAGCTCTTCCTATGTTAATAATAGTTATTCAGAAATCAAGGAGGCTCTTCATGGAGTAAATCAAAGATTTGTACACCAGGCTGTGAACCGAGCTCTTGATTTGAATATTCATCGACCTAAAAGAAGGGTTCGTCGTGCTGCTTCTATGTCATTTTCAGAAATCAAGGAGGCTGTTGAAAGACTACATAAAAGATATGCTCGGAGAGAAGAACCTCACCAGGCTGTCAACAACCGGGATCCTGATTTGAATAATCATCGATCTAAAGAAGCGATTGATGCTCTCGTTCGGAAGGATGTTGATCACTTCATGCGTAGTGGCTCTGTTGCAGGTGGTGAAAGTGATGCGAGACCAATTTATGAGACCATTATGGAGGGTCTCAGTCAATCTACAATAGAAGCTGATGTATCTGATGGTCTAATGTCTGTCCCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGATGGAAACCGGAACTTCGCCTCACCTTGGGGCCGGGGGCTTTTTGGCTGATGATCAGGGCTTAGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCAATAACAGACGATGCATGCAATCATAAAACAGCTGCTGGTACACTTATTGTTTGCCCTGCAAGTATTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTTCTGAAGAACATAAACTTACTGTTTTGGTTTATCATGGGAGCAATAGGACAAAGGATCCTATCGAACTTGCAAAATATGATGTGGTCCTCACAACATATTCTATTGTAAGTAATGAAGTTCCAAAGGAGAATGATAATATTGATTCTTCAATTAAGCATGCTTCTGGTCCTCTTGAAAAAGTAGATTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAACACTAAGGCAGCTAAAGCTTGCTGCAGTCTTGGTGCCAAAAATAGGTGGTGCTTATCTGGGACACCTATTCAAAATACTATCAATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGATGTGTATGATTCATTCTACAACACAATAAAACTTCCAATAAAGACAAATCCTACCCTAGGGTACAAGAATCTTCAGACAATTCTGAGTGCGATTGTGCTTCGCCGTACAAAAGGGACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACGATTGAGCTAACTATGGTGGATTTTTCCGTTGAGGAGCGGGCCTTCTATAGGGAGTTGGAAGCAGATTCACGTTCCAAATTTGAGGAATATGCTCATGCAAAGACTGTGGACCTAAACCTAAACTATACAGGTATTCTTGTAAAGCTTTTGCGTCAACGTCAAGCTTGTAATCACCCAAGACTTGTTAAAGAATATCATTTTGATCCTCCTCTGAAATCCATTGGGGAAATGGCAAAGTCACTGCCAAAGGAGAAGTTGATTGATCTGTTTAATAGTTTGGAAACAACCTCTGCTATATGCTGTTTATGCAAGGATCCACCTGAAGACCCTGTTGTTACAATGTGTGGCCATGTCTTCTGTTATGAATGTGTATCAGACTGCTTGAACGGTGACGATAATACATCCCCTGCTCCTGGCTGTGAAGCAGCACTTGCAGATGATGTTTTCTCCAAAACTACTTTGAGGAGTTTATTGTCTGATGAACTTGGTGATAGTAATCCTATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAATCAGTACACATCATCCAAAATGAAAGCTCTCCTCGAGATTCTTCATTCAAATTGTAAACTAGATAGTCCTAGGTCTGGTTTACTAAATTCTGCTGGAAGCCATAGAGGTTCAACATCTTCTTATGATTCATATATGAAACACACAAGAAACTATTCAGAGTCCACAACTGAAGAGCCAATAAAGACTATAGTTTTTTCCCAGTGGACTAGAATGTTGAACTTAGTCCAGGCATCATTGAAGCAATCCGGTATACAATACGGGAGACTTGATGGGAGCATGTCTCTGGCAGCTAGGGACAGATCTGTTAAAGATTTCAATACTGAACCCGAGGTAACTGTTATGCTGATGTCCCTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATCTCATGTTATTCTTTTGGATCCTTGGTGGAATCCAAAAACTGAAGATCAAGCTATTGATCGAGTTCATCGAATTGGACAAACTCGTCCTGTCACTGTGACACGGCTCACTATAAGAGATACAGTTGAAAGGAGAATACTGTCTCTTCAGGAACGTAAGAGGAAAATGGCTGCATCTGCTTTTGGTGAAGACCATACCCCCCAGAATGGCCTTACAATTGATGATCTGAAATATATTTTTGATGTAGATTTTAGATGA 2631 0.4113 MAVTISALNLRRSMALLRRRSSSKLLRRSSSHLLLPIPMQHCSARKLELEGLRFYGGWWPRHDSSSTGESTSNASSSYVNNSYSEIKEALHGVNQRFVHQAVNRALDLNIHRPKRRVRRAASMSFSEIKEAVERLHKRYARREEPHQAVNNRDPDLNNHRSKEAIDALVRKDVDHFMRSGSVAGGESDARPIYETIMEGLSQSTIEADVSDGLMSVPLLRHQKIALAWMLQMETGTSPHLGAGGFLADDQGLGKTVSMIALILMQRSLQSKSITDDACNHKTAAGTLIVCPASILRQWARELKEKVSEEHKLTVLVYHGSNRTKDPIELAKYDVVLTTYSIVSNEVPKENDNIDSSIKHASGPLEKVDWFRVILDEAQTIKNHNTKAAKACCSLGAKNRWCLSGTPIQNTINDLYSYFRFLKYDPYDVYDSFYNTIKLPIKTNPTLGYKNLQTILSAIVLRRTKGTLIDGKPIINLPPKTIELTMVDFSVEERAFYRELEADSRSKFEEYAHAKTVDLNLNYTGILVKLLRQRQACNHPRLVKEYHFDPPLKSIGEMAKSLPKEKLIDLFNSLETTSAICCLCKDPPEDPVVTMCGHVFCYECVSDCLNGDDNTSPAPGCEAALADDVFSKTTLRSLLSDELGDSNPIKAHDFDHSLVQQNQYTSSKMKALLEILHSNCKLDSPRSGLLNSAGSHRGSTSSYDSYMKHTRNYSESTTEEPIKTIVFSQWTRMLNLVQASLKQSGIQYGRLDGSMSLAARDRSVKDFNTEPEVTVMLMSLKAGNLGLNMVAASHVILLDPWWNPKTEDQAIDRVHRIGQTRPVTVTRLTIRDTVERRILSLQERKRKMAASAFGEDHTPQNGLTIDDLKYIFDVDFR 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271951g00015 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 659 IPR013083 -
Stsc271951g00015 876 CDD DEXDc_SHPRH-like 218 462 - -
Stsc271951g00015 876 CDD SF2_C_SNF 718 827 - -
Stsc271951g00015 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 424 IPR014001 -
Stsc271951g00015 876 Pfam Helicase conserved C-terminal domain 717 817 IPR001650 -
Stsc271951g00015 876 Gene3D - 477 874 IPR027417 -
Stsc271951g00015 876 ProSitePatterns Zinc finger RING-type signature. 595 604 IPR017907 -
Stsc271951g00015 876 ProSiteProfiles Zinc finger RING-type profile. 580 621 IPR001841 -
Stsc271951g00015 876 Pfam Zinc finger, C3HC4 type (RING finger) 580 615 IPR018957 GO:0046872
Stsc271951g00015 876 SMART helicmild6 734 817 IPR001650 -
Stsc271951g00015 876 SUPERFAMILY RING/U-box 578 622 - -
Stsc271951g00015 876 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 345 474 - -
Stsc271951g00015 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 701 868 IPR001650 -
Stsc271951g00015 876 SMART ultradead3 214 441 IPR014001 -
Stsc271951g00015 876 SMART ring_2 580 620 IPR001841 -
Stsc271951g00015 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 462 IPR027417 -
Stsc271951g00015 876 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 85 871 - -
Stsc271951g00015 876 Gene3D - 197 473 IPR038718 -
Stsc271951g00015 876 Pfam SNF2-related domain 221 542 IPR000330 GO:0005524|GO:0140658
Stsc271951g00015 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 874 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271951g00015 Stsc-Chr271951 73927 79259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271951g00015 175 874 RAD5 or RAD16-like Gene Family AT1G61140 49.244 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc271951g00015 SNF2_N 4.8e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271951g00015 - - gmx:100795142 895.575