Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271951g00001 ATGAAAGCGATTGGCGAAGGTCTTTCTTCGTTGCAGTCGTTAGATGTATCCTACTGCAGAAAGCTGACCGACAAGGGACTATCTGCCGTTGCTAAAGGTTGTAGTGACTTACGGGTATTGCATCTCGCCGGTTGCAGATTCATTACGGATGGTATACTGGAAGCTCTCTCCAAAAACTGTCATAATCTTGAAAAGTTGGGATTGCAAGGGTGCACAAATATTACTGACAATGGGTTGATAAGCCTTGCAAGTGGTTGTCAACAGATAAAGTATTTGGACATCAACAAATGCAGTAATGTCAGTGATGTTGGCGTCTCTAGTGTTTCTAGGGCTTGTTCATCTTCTCTCAGGACATTGAAGTTGTTGGATTGCTACAAAATTGGGGATGAAACCATATTATCCCTGTCCGAATACTGCAATAGTCTTGAGACTCTAATCATTGGTGGTTGCCGAGATGTCTCCAATGACGCAATTAAATCTCTTGCTGCTGCATGTAGCAGTAGTCTTAAGAATTTAAGGATGGATTGGTGTCTAAACCTCTCCGATTCGTCATTGAGCTGTATATTAAGTCAATGCAGAAACCTTGAGGCACTGGACATTGGTTGCTGTGAGGAGGTGAGCGATGCTGCTTTTGAGGTTATAAGCAGCGAAGAACTGGGTTTGAGGTTGAAGATTTTGAAGGTTAGTAATTGTCCGAAGATCACGGTGGCAGGAATAGGGATTCTTGTGGGAAAATGCAGTTATCTGGAATACTTGGATGTGAGATCATGCCCACATATTACAAAGGCTCTCCTGGATGAGGCTGGTCTACATTTTCCTGAATGCTGTAAAAAACAAAGAGAGAACCCAAATCTCCACAGACAAAACAATCACACTCTCCGCTCATTTGCTTTCCATTCCACCTCCCATCTCCGCCGCACCGGAAAGCGAACCATGTCGGAGTCACCGTCTCAGCCACCGCCTCCTCCTCCAGCCCCCGAAGCGCCATCGTACTGGTGTTACCACTGTGATAAGCGCGTCTCCGTCGAGACGCTCCCTGACCTACCTGACGTCATCTGCGGTGACTGCAAGAACGGCTTCGTGGAGTCCATCCCTACACCCTCTCTCCCTTCCTCTGCTGCCGCTTCCTCCTCCTCTGACGACCCCTACTTCGGCTCTCACTTCCTCCACGTCCTCCGCCTAATCGCCCAGTCAGCGCGTGACGACGACGCGTCTCCTCCTCCTCCGCCTAGCCGCTCGCCGGAAAATGATTTCCTCCGGATCGAGCTCGGAGGTTGGGACAACGACGACGATGACGATGACGACGAAGAAAACGGCATCGAGTTTCACCACGGCGGCGAAGACCTCGAAAACGCAGTCGAGGAGCGAGGAGATCGAGTCGGCAGCGAGGAACCACACGGCGACGACGAAGATCTGCGGCGGAGGAGGCGCGAGCTGCTTCGTCTACGAATTAGGGATTTGGCGACGCGAACTAGGAGTATGCGGAACCGGATCTTGGATTGGGCCGACATCCTGATGGGCCTTGAGGACAACTCTATCGAGTTCCGCCTCCAGTTGCCGGATTCCGATCGCTACGTCGGAAACCCTGAGGACTACGTCGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCTGAGAGCGACGGGGGAGGGAGGAGGGGAGCTCCGCCGGCTTCAAAGTCTGCGGTGGAGGCGCTGCCGACGGTGAAGATCTCGTCGGAGAGCGAGGTGGTGGCGTGCGCCATATGCAAGGACATGGTTGGCGTTGGTGACGTGGCGAAGAGATTGCCGTGCGGGCACGAGTACCATGGAGACTGCATTGTGCCATGGTTAGGTTCTCGAAATTCGTGCCCTGTTTGCAGGTTTGAGCTTCCAACTGATGATAGAGACTATGAAGATGACAAGAGGAAGAACAAGAGAGCCTTCAATTCTGGTAATGGTGCTTCTGGTTCTGGTGGTGGTGGTGGTGGAGGTGGTGCCTTCTCTGGTTGA 1995 0.5213 MKAIGEGLSSLQSLDVSYCRKLTDKGLSAVAKGCSDLRVLHLAGCRFITDGILEALSKNCHNLEKLGLQGCTNITDNGLISLASGCQQIKYLDINKCSNVSDVGVSSVSRACSSSLRTLKLLDCYKIGDETILSLSEYCNSLETLIIGGCRDVSNDAIKSLAAACSSSLKNLRMDWCLNLSDSSLSCILSQCRNLEALDIGCCEEVSDAAFEVISSEELGLRLKILKVSNCPKITVAGIGILVGKCSYLEYLDVRSCPHITKALLDEAGLHFPECCKKQRENPNLHRQNNHTLRSFAFHSTSHLRRTGKRTMSESPSQPPPPPPAPEAPSYWCYHCDKRVSVETLPDLPDVICGDCKNGFVESIPTPSLPSSAAASSSSDDPYFGSHFLHVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDDDDDDEENGIEFHHGGEDLENAVEERGDRVGSEEPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWADILMGLEDNSIEFRLQLPDSDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKSAVEALPTVKISSESEVVACAICKDMVGVGDVAKRLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDRDYEDDKRKNKRAFNSGNGASGSGGGGGGGGAFSG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271951g00001 664 MobiDBLite consensus disorder prediction 307 326 - -
Stsc271951g00001 664 SMART LRR_CC_2 166 191 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 220 245 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 86 111 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 34 59 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 60 85 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 139 164 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 8 33 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 246 271 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 192 217 IPR006553 -
Stsc271951g00001 664 SMART LRR_CC_2 113 138 IPR006553 -
Stsc271951g00001 664 Pfam zinc-ribbon 330 364 IPR039525 GO:0061630
Stsc271951g00001 664 SUPERFAMILY RING/U-box 576 628 - -
Stsc271951g00001 664 SUPERFAMILY RNI-like 5 273 - -
Stsc271951g00001 664 MobiDBLite consensus disorder prediction 439 472 - -
Stsc271951g00001 664 Gene3D Ribonuclease Inhibitor 183 309 IPR032675 -
Stsc271951g00001 664 MobiDBLite consensus disorder prediction 629 664 - -
Stsc271951g00001 664 Pfam Ring finger domain 581 622 IPR001841 -
Stsc271951g00001 664 Pfam Leucine Rich repeat 59 83 IPR001611 GO:0005515
Stsc271951g00001 664 Pfam Leucine Rich repeat 9 31 IPR001611 GO:0005515
Stsc271951g00001 664 Pfam Leucine Rich repeat 34 57 IPR001611 GO:0005515
Stsc271951g00001 664 MobiDBLite consensus disorder prediction 400 472 - -
Stsc271951g00001 664 SMART ring_2 581 621 IPR001841 -
Stsc271951g00001 664 PANTHER UNCHARACTERIZED 86 281 - -
Stsc271951g00001 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 628 IPR013083 -
Stsc271951g00001 664 Gene3D Ribonuclease Inhibitor 1 179 IPR032675 -
Stsc271951g00001 664 ProSiteProfiles Zinc finger RING-type profile. 581 622 IPR001841 -
Stsc271951g00001 664 FunFam E3 ubiquitin-protein ligase RING1-like 544 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271951g00001 Stsc-Chr271951 548 3419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271951g00001 492 638 C3H Transcription Factor Family AT5G01980 47.403 1.49e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271951g00001 K10268 - gmx:100780991 467.618