Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271950g00008 ATGGCTACAGACACTTCTCAGAACTTTCAGGCGGTCATTCCAGCAGAGTTCCACACTGAACTTTCACTACCAACACCAGATCACGATGGCTTGCAGTTCTGGCAGTACATGGTTGCAGGATCAATAGCAGGATCGGTAGAGCACATGGCCATGTTCCCAGTTGACACACTCAAAACCCGCATGCAAGCTCTTGCCACCACTTCATCCCTCCTCCCTCCCTTCGGCCTCCGCCAATCCCTCGCTTCCATCCTCAAGCTCGAAGGTCCTTCCTCCCTCTACCGCGGCATCTCCGCCATGGCACTTGGTGCCGGCCCCGCCCATGCCGTTTACTTCTCCGTCTACGAGTTCTGCAAACAAGCCTTCTCCTCCTCTTCCATCACAACCAACAAATATTCGTCTCTGGTGCATGCCGCTTCTGGTGTCTGCGCTACAGTCACGAGCGACGCCGTTTTCACTCCCATGGACGTGGTGAAGCAGAGGCTGCAGCTCAAGAGCAGTCCGTACAAGGGCGTGGTAGATTGCGTGACGAGAGTGGCGCGAGAAGAAGGGGTTGGCGCGTTTTTTAAGTCGTATCGGACTACCGTTGTGATGAACGCGCCGTTTACAGCGGTGCATTTCGCGGCCTATGAGGCGGCAAAGAAGGGGTTGGTGGAGGTGTCGCCGGAGAGCGCGGATGATGGGAGGTGGGTGGTTCATGCTACCGCTGGTGGTTCTGCCGGAGCCTTGGCTGCTGTCGTCACAACCCCGCTTGATGTTGTCAAAACTCAGCTCCAGTGTCAGGGTGTTTGTGGGTGTGACAGATTCTCTAGTAATTCAATTGGGCATGTAATTGAAAGAGTGATAAGAAAAGATGGATACAGAGGTCTTATGAGAGGGTATGTGCCTAGGATGCTGTTTCATGCACCTGCTGCTGCAATTTGTTGGTCCACCTACGAAGCATCCAAATCTTTCTTTCACAACCTTAATTAA 969 0.5335 MATDTSQNFQAVIPAEFHTELSLPTPDHDGLQFWQYMVAGSIAGSVEHMAMFPVDTLKTRMQALATTSSLLPPFGLRQSLASILKLEGPSSLYRGISAMALGAGPAHAVYFSVYEFCKQAFSSSSITTNKYSSLVHAASGVCATVTSDAVFTPMDVVKQRLQLKSSPYKGVVDCVTRVAREEGVGAFFKSYRTTVVMNAPFTAVHFAAYEAAKKGLVEVSPESADDGRWVVHATAGGSAGALAAVVTTPLDVVKTQLQCQGVCGCDRFSSNSIGHVIERVIRKDGYRGLMRGYVPRMLFHAPAAAICWSTYEASKSFFHNLN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271950g00008 322 PRINTS Mitochondrial carrier protein signature 49 63 IPR002067 GO:0055085
Stsc271950g00008 322 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Stsc271950g00008 322 PRINTS Mitochondrial carrier protein signature 36 49 IPR002067 GO:0055085
Stsc271950g00008 322 PRINTS Mitochondrial carrier protein signature 188 206 IPR002067 GO:0055085
Stsc271950g00008 322 PRINTS Mitochondrial carrier protein signature 146 164 IPR002067 GO:0055085
Stsc271950g00008 322 PRINTS Mitochondrial carrier protein signature 95 115 IPR002067 GO:0055085
Stsc271950g00008 322 PANTHER MITOFERRIN-1-RELATED 28 319 - -
Stsc271950g00008 322 FunFam Mitochondrial RNA-splicing protein MRS3 166 322 - -
Stsc271950g00008 322 Pfam Mitochondrial carrier protein 132 217 IPR018108 -
Stsc271950g00008 322 Pfam Mitochondrial carrier protein 31 123 IPR018108 -
Stsc271950g00008 322 Pfam Mitochondrial carrier protein 228 320 IPR018108 -
Stsc271950g00008 322 Gene3D Mitochondrial carrier domain 220 322 IPR023395 -
Stsc271950g00008 322 Gene3D Mitochondrial carrier domain 9 219 IPR023395 -
Stsc271950g00008 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 317 IPR018108 -
Stsc271950g00008 322 SUPERFAMILY Mitochondrial carrier 29 312 IPR023395 -
Stsc271950g00008 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 215 IPR018108 -
Stsc271950g00008 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 31 120 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271950g00008 Stsc-Chr271950 37447 44788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271950g00008 25 322 Chloroplast and Mitochondria Gene Families AT1G07030 68.197 1.75e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271950g00008 K15113 - qsa:O6P43_026278 479.174