Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271950g00007 ATGGCACTCACCTTCATGTTGATGCTTCTCCTTGGAAACTTCACTACTATGGCATTCTCTGCTTCTCTAGTACGATCTGATGAGTTCGTGGGTTCTGTCAGCGAAATCATTGGGCTCTTGAGAGATGTTGTTTCCATCTTGTCCAAGTTTAGCGCTGTGTTTGTTGGTAATTCGCATCTCAACAACGCCATTCTTGACTCTCTTAAATTGTTGGACTTGTCCTCGGATGAACTTGACTCCTGTGTCTCCGCTATTCAAAACTCCAAAGGGACAAGAAACAGCACACAAAATGCTTTATTAGGATCCGATTTGACAACATGGCTAAGTGCTGTCCTAGCAAATCTAGACACAATCACTGAAGGATTCCAAGGCACAACAAGTATCGTCACAGGTTTAATCTCCACCGGACTTAGACAGGTGACATCGCTAGTGAAGAATCTCCTCTTAAAAATTGATATCCCCCGGAATGATGGCGGCGAGGGACCGCGATTTCCTTCGTGGGCGAAGCCGGAGGAGAGGAAGCTTCTGGAAGAAAATAATGGAGTGACTGCGGATGTTGTGGTGGCCGCAGATGGGACTGGAAATTTCACAAGGGTGACAGATGCGGTTTTGGCTGCACCGGAAAAAAACTTGAAGAGGTTTGTGATTTACGTGAAGAGAGGCATTTACAATGAGTACGTGGAGATTGATAAGAATAAGTGGAATATTGTGATGATCGGAGATGGTATCGGTGCCACTGTTATCACCGGCAACCGGAATGTTGTCGATGGCTGGACCACTTTTGGATCTGCCACCTTTGCTGTAATTGGAAGAGGGTTCATAGCACGAGACATTACTTTCGAGAACACAGCAGGGCCAGAAAAGAAACAAGCAGTAGCACTAAGAACCAGTTCTGACCTCTCCATCTACTTCCGTTGCGAAATCTCCGGCTACCAAGACAGCCTCTTCACTCAATCAATGAGGCAATTCTTCAGAGAGTGCAAAATTTCGGGCACCGTGGATTTCATCTTTGGTGACGCAACCGCATTCTTTCAAAAATGCAATATACTTGTCAAGAAAGGGTTACCAAAACAAAGGAATGCAATCACTGCACAAGGTAGAATAGATCCCAATGAACCAACAGGGTTCTCGTTGCAATTTTGCAACATAACCGCTGATTCTGACCTCATTCCGTTTGTTAATACCACGGAATCTTTCTTGGGGAGGCCGTGGAAACAGTATTCAAGAACGGTTTTTCTGCAAAACTATATAAGCGATGTTATAAGCCCTCAAGGTTGGACACCATGGAATGAGAGCAACTTTTATTTGGACACACTGTATTACGCTGAGTATATGAACACCGGTCCCGGTGCCGGGATAGATAAAAGAGTGAAATGGCCCGGATACCGTGTTTTGAAAAGCTCCGATGAAGCTGGTAATTTTACAGTGGCCAAATTCATTGAAGGGAATTTATGGTTGCCATCAACTGGTGTGGCATTTACCGCTGGATTTGAAAAGGAAGTCGTTTGA 1509 0.448 MALTFMLMLLLGNFTTMAFSASLVRSDEFVGSVSEIIGLLRDVVSILSKFSAVFVGNSHLNNAILDSLKLLDLSSDELDSCVSAIQNSKGTRNSTQNALLGSDLTTWLSAVLANLDTITEGFQGTTSIVTGLISTGLRQVTSLVKNLLLKIDIPRNDGGEGPRFPSWAKPEERKLLEENNGVTADVVVAADGTGNFTRVTDAVLAAPEKNLKRFVIYVKRGIYNEYVEIDKNKWNIVMIGDGIGATVITGNRNVVDGWTTFGSATFAVIGRGFIARDITFENTAGPEKKQAVALRTSSDLSIYFRCEISGYQDSLFTQSMRQFFRECKISGTVDFIFGDATAFFQKCNILVKKGLPKQRNAITAQGRIDPNEPTGFSLQFCNITADSDLIPFVNTTESFLGRPWKQYSRTVFLQNYISDVISPQGWTPWNESNFYLDTLYYAEYMNTGPGAGIDKRVKWPGYRVLKSSDEAGNFTVAKFIEGNLWLPSTGVAFTAGFEKEVV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271950g00007 502 SUPERFAMILY Pectin lyase-like 183 496 IPR011050 -
Stsc271950g00007 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 153 IPR035513 -
Stsc271950g00007 502 PANTHER PECTINESTERASE 59 487 - -
Stsc271950g00007 502 Pfam Plant invertase/pectin methylesterase inhibitor 62 147 IPR006501 GO:0004857
Stsc271950g00007 502 Pfam Pectinesterase 185 483 IPR000070 GO:0030599|GO:0042545
Stsc271950g00007 502 FunFam Pectinesterase 179 497 - -
Stsc271950g00007 502 Gene3D - 179 497 IPR012334 -
Stsc271950g00007 502 ProSitePatterns Pectinesterase signature 1. 210 229 IPR018040 -
Stsc271950g00007 502 ProSitePatterns Pectinesterase signature 2. 329 338 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271950g00007 Stsc-Chr271950 34362 36180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271950g00007 5 497 Carbohydrate Esterase AT3G43270 56.117 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271950g00007 K01051 - gmx:100801813 602.438