Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271950g00006 ATGGCACTCACCTTCATGTTGATGCTTCTCCTTGTAAACCTCACTTCTATGGCCGCCTCTGCTCCTCTCTCTTGTAATTACCGAGGCGCACCACCAGACTGCTTCAAGGAACCTTCTGATGAGTTCGCGGGTTCTGTCAGCCAAATTATTGGCCTTTTGAAAGATATCATTTCCATCTTGTCCAAGTTTAGAGGTGTCTCTGCTGGTAATTTGCATCTCAACAACGCCATTCTTGATTCTGTTGAATTGTTGGACTTGTCCTCGGATGAGCTTGGCTCCTCTGTCTCCGCCATTCAAAACTCCAAAGGGAGAAACAACAGCACAGAAAATGCTTTATTAGGATCCAATTTGACGACATGGCTAAGTGCTGTCCTAGCAAATCTAGACACAATCGCCGATGGATTCCAAGGCACAACAAGTATTGTCGCAAGATTAATCTCCACCGGACTTAGACAAGTGACATCACTAGTGAAGAATCTCCTCGCAGAAATTGATACCCCCAAGAATGTTTTATTCGACGGCGCCGGCGAGGGTCGGCCGTTTCCTTCGTGGGTGAAGTTGGAGGAGAGGAAGCTTATGGAAGCGCATGGAGTGACTCCGGACGTTGTGGTGGCCGCAGATGGAACTGGAAATTTCACAAGGGTGACGGATGCGGTTTTGGCTGCACCGGAAAAGAGCGAAAAGAGGTTTGTGATTTACGTGAAGAGAGGCGTTTACAATGAGTACGTGGAGATTAAGAAGGATAAGTGGAATATCATGATGATCGGAGATGGTATCGGTGCCACTGTTATCACCGGCAACCGGAATGTTGTTGATGGCTGGACCACTTTTCGATCAGCTACCTTCGGTTTTGGATTCGAATTTATGGCTGCCTTCAACTGGTGTGGCATTTACCGCTGGATTAACTGA 909 0.473 MALTFMLMLLLVNLTSMAASAPLSCNYRGAPPDCFKEPSDEFAGSVSQIIGLLKDIISILSKFRGVSAGNLHLNNAILDSVELLDLSSDELGSSVSAIQNSKGRNNSTENALLGSNLTTWLSAVLANLDTIADGFQGTTSIVARLISTGLRQVTSLVKNLLAEIDTPKNVLFDGAGEGRPFPSWVKLEERKLMEAHGVTPDVVVAADGTGNFTRVTDAVLAAPEKSEKRFVIYVKRGVYNEYVEIKKDKWNIMMIGDGIGATVITGNRNVVDGWTTFRSATFGFGFEFMAAFNWCGIYRWIN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271950g00006 302 Gene3D - 195 293 IPR012334 -
Stsc271950g00006 302 Pfam Pectinesterase 201 289 IPR000070 GO:0030599|GO:0042545
Stsc271950g00006 302 ProSitePatterns Pectinesterase signature 1. 226 245 IPR018040 -
Stsc271950g00006 302 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 166 IPR035513 -
Stsc271950g00006 302 PANTHER PECTINESTERASE 15 290 - -
Stsc271950g00006 302 SUPERFAMILY Pectin lyase-like 198 283 IPR011050 -
Stsc271950g00006 302 CDD PMEI-like_4 8 162 - -
Stsc271950g00006 302 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 162 IPR035513 -
Stsc271950g00006 302 SMART PMEI_2 38 163 IPR006501 GO:0004857
Stsc271950g00006 302 Pfam Plant invertase/pectin methylesterase inhibitor 71 162 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271950g00006 Stsc-Chr271950 25668 27281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271950g00006 5 286 Carbohydrate Esterase AT3G43270 47.635 4.99e-78 245