Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271949g00001 ATGGATAATAACAATGATTTGGAGAACAACAATTATGGCAAGGGGGAAGTTGCAAGCAACAACAATAATGGTGGTATTTTTGCAAAGACACCATCAATGGTGGTAAGAAAGAAGACATCATCGGAAGATTCAATCATTGTCAGAAACAATAGTAATGGTCGAATGGAAATGGTTAGGAATTTCGTGACAAATTTGAGGGAGGTGTTTCTTGGAACTAAGCTTGTTGTGCTTTTCCCGGCAGTGCCTTTGGCTGTTGCTGCAGATTTGTATAGCTTTGGGAGGCCATGGATTTTTGCATTAAGCTTAATTGGACTTGCCCCGCTAGCAGAACGTGTCAGCTTCCTCACTGAGCAAATTGCTTACTACACTGGTCCAACAGTTGGAGGGCTTCTGAATGCAACATGTGGTAATGCAACGGAGATGATAATTGCATTGTTAGCACTGCGGAAGAACAAAGTGGATGTTGTCAAGTTCTCCCTTTTGGGTTCTATTCTCTCAAACCTTCTTTTGGTTCTTGGTAGTTCACTCCTTTGTGGTGGCTTGGCCAACCTTAAGAGGGAGCAAAGATTTGACAGGGAAGAAGATGAAGAGGAAAAGGCTGTTATAGGATTTTGGAGTTCATTTACATGGTTGGTGGTTATGACATTGGTCATATCTGTGCTATCTGAATATGTTGTGGGAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCGGTTAGCTTCATTAGCTTAATTTTGCTTCCAATTGTTGGGAATGCTGCTGAACATGCCGGTTCAATCATATTTGCTTTTAAGAATAAGTTGGACATATCTTTGGGTGTGGCTATGGGATCAGCAACTCAAATTTCCATGTTTGTGGTTCCATTAAGTGTGATTGTTGCATGGATAATGGGCATTCGAATGGATCTGGACTTCAATCTTCTTGATACCGGGTGTCTTGCTTTGGCAATTATTGTTACAGCCTTTACTTTACAGGATGGAACTTCACATTACTTGAAGGGAGTTGTTCTTACACTATGTTACATTGTAATAGCTGCGTGCTTTTTTGTTCTCAAAACTCCATTTACCGACCCTGACATCGAAACTAAAACATCCTATCATGCTATGACAAACTAA 1119 0.4084 MDNNNDLENNNYGKGEVASNNNNGGIFAKTPSMVVRKKTSSEDSIIVRNNSNGRMEMVRNFVTNLREVFLGTKLVVLFPAVPLAVAADLYSFGRPWIFALSLIGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALRKNKVDVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRFDREEDEEEKAVIGFWSSFTWLVVMTLVISVLSEYVVGTIEAASDSWGISVSFISLILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVIVAWIMGIRMDLDFNLLDTGCLALAIIVTAFTLQDGTSHYLKGVVLTLCYIVIAACFFVLKTPFTDPDIETKTSYHAMTN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271949g00001 372 Pfam Sodium/calcium exchanger protein 96 187 IPR004837 GO:0016020|GO:0055085
Stsc271949g00001 372 Pfam Sodium/calcium exchanger protein 207 348 IPR004837 GO:0016020|GO:0055085
Stsc271949g00001 372 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 194 353 IPR004713 GO:0006812|GO:0008324|GO:0016020
Stsc271949g00001 372 FunFam Vacuolar cation/proton exchanger 194 351 - -
Stsc271949g00001 372 Gene3D - 125 351 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271949g00001 Stsc-Chr271949 6280 11625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271949g00001 186 358 Antiporters AT2G38170 71.264 2.00e-83 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271949g00001 K07300 - gmx:100802344 298.516