Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271948g00011 ATGGAAAAGAAAACATACACTAATAATAATAACACTATTAAATTCCTCTACAGTTACGGCGGCAGGATCCTCCCCCGCTCCACCGACGGCCAACTCCGCTACACCGGTGGCCACACCAGAATCCTCACCGTCAATCCTTCCATCACCTACTCTGAGTTGATAGCGAAGCTTTGCGAGTTGTGCGGTTCGCCGGCGACGTTGAAGTGTCCGTTACCGAACGGAGACTTGGAAACTCTGGTTTCCGTTAAGAACGACGAAGATTTGGCCAACATACTTCAGGAATATGACAGAGCCTCGTTGTCGTTGCCTAATCCATTGAAGATCAGAGCCATTCTATCGCTGCCGAGTTCTCTCAAGACACCGTCTCCTACTCCTCCGTCATCGTTGTCATCTTCGTCGTCGTCGTTGTCCTCTTCCAGTGCCGCTCGCTCTCCGTTTGGATCTTCTCGATCCTCCGCCGAATCTCCACCGTACGCTGCGCCACATAGATTCCTAAGCCGGAATTTCTCACCGGCGGTGTATCCGGCCGGTGTCCGTAGCGGTGGAGTTTGTTGCTGCACACCGCACTTCCATGGAAGCCCTAGATTCCTCTATCGCGGTCCTCACTCCAGTTATTACTGCCACTGA 627 0.5247 MEKKTYTNNNNTIKFLYSYGGRILPRSTDGQLRYTGGHTRILTVNPSITYSELIAKLCELCGSPATLKCPLPNGDLETLVSVKNDEDLANILQEYDRASLSLPNPLKIRAILSLPSSLKTPSPTPPSSLSSSSSSLSSSSAARSPFGSSRSSAESPPYAAPHRFLSRNFSPAVYPAGVRSGGVCCCTPHFHGSPRFLYRGPHSSYYCH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271948g00011 208 MobiDBLite consensus disorder prediction 118 138 - -
Stsc271948g00011 208 SUPERFAMILY CAD & PB1 domains 29 119 - -
Stsc271948g00011 208 PANTHER OS05G0427100 PROTEIN-RELATED 11 151 - -
Stsc271948g00011 208 Pfam PB1 domain 28 98 IPR000270 GO:0005515
Stsc271948g00011 208 Gene3D - 33 112 - -
Stsc271948g00011 208 SMART PB1_new 27 113 IPR000270 GO:0005515
Stsc271948g00011 208 CDD PB1_UP2 18 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271948g00011 Stsc-Chr271948 67627 68792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271948g00011 13 97 MAP Kinase Kinase Kinase AT5G57610 52.941 1.97e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271948g00011 - - gmx:100815502 190.274