Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271948g00008 ATGAACCCCTACGATAACAGATACTCTGACGCCGCTTCTTATCGCAACCGTCGCAGCGATATCCTCGCTTCTGGCCCATTCATGGTGCCTCCTGCTGTTGTTGGTCGTGGCGGTCCGGCCCCCTACGGTGCTCCTACGGTCCCTTACGGAGCAGGAAGAGGAGCTCCCAATGCATTCGGATCCTCGTCGGTTCCTCCCTTTATGCCTCCTCCTGGGGGTTTCAATATAGGCCGAGGCGGTGGTGGTGGACTGGGTAATGGCCATGCCGGTGGCAGAAAAGACGGCGGAGGTCGTCACGGTTCCGGTGGAAGAGGTCGAGGTGGTAGTGGCAGAGGCGGTGGAACCGGTAGAGGCAGTTTTAGGGGAGGTAGAAATCACGGTGGTGGAAGAGGAGGAGGTGGTGGTAGACATGGTGGACGTTCATCGAAGGATGAATTGAACAAGATTTCCCTGCCAAAGCAGGATTTTAGGAATTTGGTCCCGTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGCGAGGGCCATGTCCGACCAAGAAGTGATGCATTATCGTGAGAGTAGAGAAATCACAGTGCAAGGCCATGATGTGCCAAAACCCATTCGAATGTTCCACGAGGCCAGATTTCCTGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCCCAGGGTTGGCCGATGGCTCTTAAAGGCCGAGATTTGATTGGCATTGCGGAGACTGGCTCTGGCAAAACTTTGTCATATCTGCTTCCTGCTTTGGTGCATGTCAGTGCACAACCTCGACTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTTGCAGGACGGGCAAATATTAGAAGCACGTGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATTCGTGACCTTCAAAGGGGTGTTGAGATTGTTATTGCTACACCAGGTCGCCTAATAGATATGCTGGAAGCTCAGATCACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCCAGACAGTTCCTGCGCAACCCATATAAGGTAGTTATTGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTCGAAGTTCTGACGGATGCGGAGAAATATAATAGATTGATTAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAGTTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACAAGACAATTGAGAATGGATGGATGGCCAGCCCTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGACTGGGTTTTGGCTGAGTTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTATTAA 1554 0.491 MNPYDNRYSDAASYRNRRSDILASGPFMVPPAVVGRGGPAPYGAPTVPYGAGRGAPNAFGSSSVPPFMPPPGGFNIGRGGGGGLGNGHAGGRKDGGGRHGSGGRGRGGSGRGGGTGRGSFRGGRNHGGGRGGGGGRHGGRSSKDELNKISLPKQDFRNLVPFEKNFYVESPAARAMSDQEVMHYRESREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLAHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQITNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNPYKVVIGSPELKANQSINQVVEVLTDAEKYNRLIRLLKEVMDGSRVLIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRITVY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271948g00008 517 SMART ultradead3 221 424 IPR014001 -
Stsc271948g00008 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 410 IPR027417 -
Stsc271948g00008 517 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
Stsc271948g00008 517 Gene3D - 165 412 IPR027417 -
Stsc271948g00008 517 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 178 511 - -
Stsc271948g00008 517 MobiDBLite consensus disorder prediction 137 151 - -
Stsc271948g00008 517 CDD SF2_C_DEAD 421 511 - -
Stsc271948g00008 517 MobiDBLite consensus disorder prediction 71 152 - -
Stsc271948g00008 517 FunFam probable ATP-dependent RNA helicase DDX17 164 411 - -
Stsc271948g00008 517 Pfam DEAD/DEAH box helicase 226 396 IPR011545 GO:0003676|GO:0005524
Stsc271948g00008 517 Gene3D - 414 512 IPR027417 -
Stsc271948g00008 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 511 IPR027417 -
Stsc271948g00008 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 517 IPR001650 -
Stsc271948g00008 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 408 IPR014001 -
Stsc271948g00008 517 CDD DEADc_DDX5_DDX17 214 409 - -
Stsc271948g00008 517 Pfam Helicase conserved C-terminal domain 432 511 IPR001650 -
Stsc271948g00008 517 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 202 230 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271948g00008 Stsc-Chr271948 46083 49241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271948g00008 199 511 Eukaryotic Initiation Factors Gene Family AT3G19760 33.227 7.12e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271948g00008 K12823 - gmx:100777610 696.427