LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271948g00007	ATGAACCCCTACGATAACAGATACTCTGACGCCGCTTCTTATCGCAACCGTCGCAGCGATATCCTCGCTTCTGGCCCATTCATGGTGCCTCCTGCTGTTGTTGGTCGTGGCGGTCCGGCCCCCTACGGTGCTCCTACGGTCCCTTACGGAGCAGGAAGAGGAGCTCCCAATGCATTCGGATCCTCGTCGGTTCCTCCCTTTATGCCTCCTCCTGGGGGTTTCAATATAGGCCGAGGCGGTGGTGGTGGACTGGGTAATGGCCATGCCGGTGGCAGAAAAGACGGCGGAGGTCGTCACGGTTCCGGTGGAAGAGGTCGAGGTGGTAGTGGCAGAGGCGGTGGAACCGGTAGAGGCAGTTTTAGGGGAGGTAGAAATCACGGTGGTGGAAGAGGAGGAGGTGGTGGTAGACATGGTGGACGTTCATCGAAGGATGAATTGAACAAGATTTCCCTGCCAAAGCAGGATTTTAGGAATTTGGTCCCGTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGCGAGGGCCATGTCCGACCAAGAAGTGATGCATTATCGTGAGAGTAGAGAAATCACAGTGCAAGGCCATGATGTGCCAAAACCCATTCGAATGTTCCACGAGGCCAGATTTCCTGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCCCAGGGTTGGCCGATGGCTCTTAAAGGCCGAGATTTGATTGGCATTGCGGAGACTGGCTCTGGCAAAACTTTGTCATATCTGCTTCCTGCTTTGGTGCATGTCAGTGCACAACCTCGACTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTTGCAGGACGGGCAAATATTAGAAGCACGTGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATTCGTGACCTTCAAAGGGGTGTTGAGATTGTTATTGCTACACCAGGTCGCCTAATAGATATGCTGGAAGCTCAGATCACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCCAGACAGTTCCTGCGCAACCCATATAAGGTAGTTATTGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTCGAAGTTCTGACGGATGCGGAGAAATATAATAGATTGATTAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAGTTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACAAGACAATTGAGAATGGATGGATGGCCAGCCCTATCCATCCATGGTGATAAAAATCAGGCTGAAAGGGACTGGGTTTTGGCTGAGTTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTAATCAATTATGATTTTCCTTCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGCGCAGGGGCTAAAGGGACTGCGTACACCTTTTTCACTCATGGTAATGCTAAGTATGCTAGGGCTCTGATAAAGATTTTGCAAGATGCAGGTCAGGTTGTGAGTCCTGCACTGTCTGCATTGGCTCGGTCAGCTGGTTCTGCTCTAGGATCTGGAGGAAGCTTCCGATCAAGAGGGCGCNNNNNNNNNNGGCAACAGAGGTGGAAGATCAGGATCCAATACCATTCCACTAGGTTCAAAAAGGCCTTGGCATGGTATGTAGTTGATGTTGCCTGGAGCAATTTGTATCAGTACTACTAA	1917	0.483	MNPYDNRYSDAASYRNRRSDILASGPFMVPPAVVGRGGPAPYGAPTVPYGAGRGAPNAFGSSSVPPFMPPPGGFNIGRGGGGGLGNGHAGGRKDGGGRHGSGGRGRGGSGRGGGTGRGSFRGGRNHGGGRGGGGGRHGGRSSKDELNKISLPKQDFRNLVPFEKNFYVESPAARAMSDQEVMHYRESREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLAHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQITNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNPYKVVIGSPELKANQSINQVVEVLTDAEKYNRLIRLLKEVMDGSRVLIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHGNAKYARALIKILQDAGQVVSPALSALARSAGSALGSGGSFRSRGRXXXXQQRWKIRIQYHSTRFKKALAWYVVDVAWSNLYQYY	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271948g00007	638	Pfam	Helicase conserved C-terminal domain	432	542	IPR001650	-
	Stsc271948g00007	638	SMART	ultradead3	221	424	IPR014001	-
	Stsc271948g00007	638	Gene3D	-	414	584	IPR027417	-
	Stsc271948g00007	638	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	274	563	IPR027417	-
	Stsc271948g00007	638	CDD	SF2_C_DEAD	421	551	-	-
	Stsc271948g00007	638	FunFam	ATP-dependent RNA helicase RhlB	412	585	-	-
	Stsc271948g00007	638	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	354	362	IPR000629	-
	Stsc271948g00007	638	Pfam	DEAD/DEAH box helicase	226	396	IPR011545	GO:0003676\|GO:0005524
	Stsc271948g00007	638	MobiDBLite	consensus disorder prediction	137	151	-	-
	Stsc271948g00007	638	SMART	helicmild6	461	542	IPR001650	-
	Stsc271948g00007	638	Gene3D	-	165	412	IPR027417	-
	Stsc271948g00007	638	MobiDBLite	consensus disorder prediction	35	152	-	-
	Stsc271948g00007	638	FunFam	probable ATP-dependent RNA helicase DDX17	164	411	-	-
	Stsc271948g00007	638	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	179	581	-	-
	Stsc271948g00007	638	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	233	408	IPR014001	-
	Stsc271948g00007	638	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	436	581	IPR001650	-
	Stsc271948g00007	638	CDD	DEADc_DDX5_DDX17	214	409	-	-
	Stsc271948g00007	638	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	202	230	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271948g00007	Stsc-Chr271948	45238	49241	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271948g00007	199	580	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.817	3.08e-68	226

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271948g00007	K12823		-	gmx:100777610	810.061