Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271948g00006 ATGACGACGAGATTCAAGAAGAACAGGAAGAAGAGAGGCCACGTGAGCGCCGGCCACGGACGTATCGGAAAGCACCGCAAGCACCCTGGAGGTCGCGGTAACGCCGGAGGAATGCACCACCACCGCATCCTCTTCGACAAGTACCACCCCGGTTACTTCGGCAAGGTCGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCCATTGCCCTATCGTCAACATCGACAAGCTCTGGTCCTTGGTTCCCCAAGAGGTGAAGGATAAGGCCACCAAGGACGGCTCCAAGGCTCCGTTGATCGACGTCACGCAGTTCGGTTACTTCAAGGTTTTGGGGAAGGGCGTTCTTCCTGAGAACCAGCCTGTGGTCGTGAAGGCTAAGCTTGTTTCGAAGGTTGCGGAGAAGAAGATCAAGGAGGCTGGTGGTGCCGTTGTTCTCACCGCTTGA 447 0.5615 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSLVPQEVKDKATKDGSKAPLIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKVAEKKIKEAGGAVVLTA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271948g00006 148 FunFam 60S ribosomal protein L27a 58 148 - -
Stsc271948g00006 148 Gene3D - 58 148 - -
Stsc271948g00006 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Stsc271948g00006 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Stsc271948g00006 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Stsc271948g00006 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Stsc271948g00006 148 MobiDBLite consensus disorder prediction 1 35 - -
Stsc271948g00006 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 145 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271948g00006 Stsc-Chr271948 41211 42169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271948g00006 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 88.514 1.50e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271948g00006 K02900 - thj:104809056 288.885