Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271948g00005 ATGGGTCGCCATTCTTGCTGTGTAAAGCAGAAACTGAGGAAAGGTCTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATCACATAACAAGGTTCGGTGTTGGTTGCTGGAGCTCCGTTCCAAAACTAGCTGGGCTGCAAAGATGCGGAAAGAGTTGCAGATTAAGATGGATAAACTATCTGAGGCCTGATTTAAAGAGAGGGATGTTCTCCCAACAAGAAGAGGATCTTATAATCAGTCTCCATGAAATCCTCGGAAATAGGTGGGCTCAGATAGCAGCACAGTTACCAGGAAGAACGGATAATGAGATAAAGAACTTCTGGAATTCATGTCTGAAGAAGAAGCTAGTGAAGCAAGGAATTGACCCAGCCACACACAAGCCTCTTCTATCAACTGATCATCATCATGATGATAATAAGAAACAAGAAGACACCAAAATAATCATGACCACGGAGAATAATAATGAGAAGAACAACACAACACTACCTTCCTCTATACACCTTCCATTCTCAACAAACTTACCCTCATCAATTCTTTTCAACCATTCCGGCAGTTACTACGGCGGCGGCGACGACGATAACAACAACGACAACGCAATAATAGAAGCTTCTAGAGAGATGTTCATGACTAATAATAATAACAAGGCAACAACGTTTTTGGACCCTCTATCATCTCTCTATGCAGATTATTTCCCTCAACAACAACAACAACCGAATAATAATTACCATCAGCTATCAGCAGTAACTGCCGTAACTAACTACTGTGGAGGAGGATTCTGTTCAATGCCGAGCCTAACTAACTCGGATCAAGGGGGACACGTGTCAGTGACAGATCATCATCAGTTGGTTAAGGAGAGTTCTAGCAATAACAGCTCATCAAACATGTACACATCGCCATGGGACGATAATATTATGAGTAACAAGATGATGGAACCGTTTTTTCAGTTCAATGCCATCAAATGTGAGGATTTATACAAGACCAGTTGTTCTTCATGGGAAGAAGATAATAATAATCATCAAGAACACACTCATCATAATACTGCTGCTTCTTCTTCTTCCATACATTTCAGTAACTATAATCCGTTAACGTCGCTTTCCGAAGATCTAACCGCTGCTAATTTTGATGTCTTCCACCATATATGA 1143 0.4103 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEILGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLVKQGIDPATHKPLLSTDHHHDDNKKQEDTKIIMTTENNNEKNNTTLPSSIHLPFSTNLPSSILFNHSGSYYGGGDDDNNNDNAIIEASREMFMTNNNNKATTFLDPLSSLYADYFPQQQQQPNNNYHQLSAVTAVTNYCGGGFCSMPSLTNSDQGGHVSVTDHHQLVKESSSNNSSSNMYTSPWDDNIMSNKMMEPFFQFNAIKCEDLYKTSCSSWEEDNNNHQEHTHHNTAASSSSIHFSNYNPLTSLSEDLTAANFDVFHHI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271948g00005 380 FunFam MYB transcription factor 11 67 - -
Stsc271948g00005 380 FunFam Transcription factor MYB86 69 137 - -
Stsc271948g00005 380 CDD SANT 70 109 IPR001005 -
Stsc271948g00005 380 SMART sant 66 114 IPR001005 -
Stsc271948g00005 380 SMART sant 13 63 IPR001005 -
Stsc271948g00005 380 Gene3D - 69 160 - -
Stsc271948g00005 380 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc271948g00005 380 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc271948g00005 380 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc271948g00005 380 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc271948g00005 380 CDD SANT 17 61 IPR001005 -
Stsc271948g00005 380 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Stsc271948g00005 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc271948g00005 380 Gene3D - 11 67 - -
Stsc271948g00005 380 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc271948g00005 380 MobiDBLite consensus disorder prediction 332 352 - -
Stsc271948g00005 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271948g00005 Stsc-Chr271948 21518 23210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271948g00005 1 141 MYB Transcription Factor Family AT4G01680 78.723 1.20e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271948g00005 Myb_DNA-binding 8.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271948g00005 K09422 - gmx:100811140 343.969