Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271947g00012 ATGGAAGCAGTTGAGGAAACGGTTATGAGAGTGGAGGAGAGCCAAGAAGAAGAAGATGCAGCAATATCAAGAGTGTTTCCATGCCTATACTGCTCAAGAACTTTCTACAGTTCTCAAGCTTTAGGGGGACACCAAAATGCTCACAGGAAAGAGAGAATAACCGCAAGAAACGCCAAGAAGGCTTCTGCTGAGTACTCACATCTTCTATTTGCTTCTTCTCTGACAACGGCTCCTACAGTTTTCCCTTCAACGTTGATCTCTGAACACGCGACGAATCTCACGTATTTTCCAAGCCACCACCATATTTCACAAGGATTTATTGGAAATGATGCTGTGCTTCCTTACCACCATATTTCACAACGATTTGTTGGAAATAATGCTGTGCTTCCTTACCGATTAAGTGAGGGTATTGATGAGAGAAGATTCGGCGGTTGGCAAAGAAGCCTTAGAAGAAGCAGTGGCTTCAACAGTGTTGAAACACCTCAACAAATATCATTGCCGAAGAGTGACACTCAAAACCTCGAGACACGGACCAAAGGGGAACGGAAATATCAAGAGCTTGATTTGTCTCTTCATTTGTAA 582 0.433 MEAVEETVMRVEESQEEEDAAISRVFPCLYCSRTFYSSQALGGHQNAHRKERITARNAKKASAEYSHLLFASSLTTAPTVFPSTLISEHATNLTYFPSHHHISQGFIGNDAVLPYHHISQRFVGNNAVLPYRLSEGIDERRFGGWQRSLRRSSGFNSVETPQQISLPKSDTQNLETRTKGERKYQELDLSLHL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271947g00012 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Stsc271947g00012 193 PANTHER ZINC FINGER PROTEIN JAGGED 18 193 IPR045320 GO:0003700
Stsc271947g00012 193 MobiDBLite consensus disorder prediction 153 181 - -
Stsc271947g00012 193 Gene3D Classic Zinc Finger 5 74 - -
Stsc271947g00012 193 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Stsc271947g00012 193 MobiDBLite consensus disorder prediction 153 173 - -
Stsc271947g00012 193 SUPERFAMILY beta-beta-alpha zinc fingers 24 53 IPR036236 -
Stsc271947g00012 193 Pfam C2H2-type zinc finger 25 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271947g00012 Stsc-Chr271947 83497 84210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271947g00012 1 51 C2H2 Transcription Factor Family AT5G48890 54.902 1.42e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271947g00012 zf-C2H2_6 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271947g00012 - - aip:107640377 166.392