Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271947g00011 ATGGTGGTGGTGATAGAGCAGCAAGAGACTGAGGATCGAAACGCAAATCTTTCCAACGCGGCTTCTGGCTACGACGCTTCCGACGGCTTTGAAACAGCCAGCGACACCGACCTCCGCAGCGACACCGAAGGCGATGACGGTGTGGGTAGCAGCCGTGAAGAAGAGGATCATCCTGATCAACAGCACGAGCAACCGCAACAGCAACATCAACAGCAGCAGCTGAAGACTGAGCAGCCGGAGCCGGAGCAGAGTGTTTCTCCAAGTAATGGTTCCTCCGGTGATCCCTTGATCAATGAGGAATTGGAGCAGAAATTATTGGTTCAAGCAAATGAAGCAAAGACAGAAGGGAACAAGCTTTTTGTGGATGGGAATTATGAGGAAGCATTATCCCAGTATGAACATGCTCTACAAGTTGCACCTGACAGGCCTTCATCGGTTGAAATACGCTCAATATGCTATGCAAACCGTGCTGCATGCTTTCAGAAACTGGGAAAATATGACAACACGGTTAAAGAATGCACAAAAGCATTAGAACTGAATCCGGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTCGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAAATGATCCCTCAAATGATCAAGCTAGGAAGGCCATTCGACGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAAAGATGAAGGAAGAGATGATGGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCGTTTTGGGATGAGTGTTGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCATATTCCATCTCATTCCAGCGTTAA 846 0.4586 MVVVIEQQETEDRNANLSNAASGYDASDGFETASDTDLRSDTEGDDGVGSSREEEDHPDQQHEQPQQQHQQQQLKTEQPEPEQSVSPSNGSSGDPLINEELEQKLLVQANEAKTEGNKLFVDGNYEEALSQYEHALQVAPDRPSSVEIRSICYANRAACFQKLGKYDNTVKECTKALELNPVYIKALVRRGEAHEKLEHFEEAIADMKKILENDPSNDQARKAIRRLEPLAAEKREKMKEEMMAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271947g00011 281 ProSiteProfiles TPR repeat profile. 109 142 IPR019734 GO:0005515
Stsc271947g00011 281 MobiDBLite consensus disorder prediction 9 25 - -
Stsc271947g00011 281 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 50 281 - -
Stsc271947g00011 281 MobiDBLite consensus disorder prediction 1 96 - -
Stsc271947g00011 281 MobiDBLite consensus disorder prediction 64 96 - -
Stsc271947g00011 281 ProSiteProfiles TPR repeat profile. 150 183 IPR019734 GO:0005515
Stsc271947g00011 281 Pfam Tetratricopeptide repeat 185 217 IPR013105 -
Stsc271947g00011 281 Gene3D Tetratricopeptide repeat domain 49 249 IPR011990 GO:0005515
Stsc271947g00011 281 Pfam Tetratricopeptide repeat 152 181 IPR001440 GO:0005515
Stsc271947g00011 281 ProSiteProfiles TPR repeat profile. 184 217 IPR019734 GO:0005515
Stsc271947g00011 281 MobiDBLite consensus disorder prediction 32 63 - -
Stsc271947g00011 281 SUPERFAMILY TPR-like 109 228 IPR011990 GO:0005515
Stsc271947g00011 281 SMART tpr_5 184 217 IPR019734 GO:0005515
Stsc271947g00011 281 SMART tpr_5 150 183 IPR019734 GO:0005515
Stsc271947g00011 281 SMART tpr_5 109 142 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271947g00011 Stsc-Chr271947 78700 82750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271947g00011 109 251 Calmodulin-binding Proteins AT3G25230 36.424 6.13e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271947g00011 K24926 - gmx:100808386 337.421