Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271947g00010 ATGTTAATAGAAAGCAACAAAATGACTAATTTAATTGATATGAGGAGAGCTAAACTTCCCATCAAGAAGACCGATAACACAACAAATAGGCAAGTCACATTCTCCAAGAGGAGGAATGGTCTCATCAAGAAAGCTTACGAGCTTTTTATTCTCTGTGATGTTAATCTTGCTCTTATAACGTTCTTCTCTTCTGGCAGGCACATTCTCTTCTCTTTCAACACAAGGTTCCTCCCTTTTGCAGCACAAACATTCATTTGTTATCACTCATTTTCATTTTCAATGTTTATAAGGGCACACAGTCATTTTTTTCTTTTCGTTTAA 321 0.3551 MLIESNKMTNLIDMRRAKLPIKKTDNTTNRQVTFSKRRNGLIKKAYELFILCDVNLALITFFSSGRHILFSFNTRFLPFAAQTFICYHSFSFSMFIRAHSHFFLFV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271947g00010 106 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Stsc271947g00010 106 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 66 IPR002100 GO:0003677|GO:0046983
Stsc271947g00010 106 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Stsc271947g00010 106 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Stsc271947g00010 106 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Stsc271947g00010 106 PANTHER SERUM RESPONSE FACTOR HOMOLOG 14 73 - -
Stsc271947g00010 106 SUPERFAMILY SRF-like 14 74 IPR036879 GO:0003677|GO:0046983
Stsc271947g00010 106 SMART madsneu2 14 75 IPR002100 GO:0003677|GO:0046983
Stsc271947g00010 106 Gene3D - 26 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271947g00010 Stsc-Chr271947 75749 76069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271947g00010 14 75 Type I MADS-box Gene Family AT1G22130 70.968 3.52e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc271947g00010 SRF-TF 5.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271947g00010 - - ahf:112705107 89.3521