Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271947g00008 ATGGGGTCTACTGCCATTACAATTTCTAACAACTACTTCACTCACCACGATGAGGTTATGTTACTGGGCCATCATGATTCTTATGTACGAGACAAGCAGATGCAAGTCACCATTGCTTATAACCATTTTGGGGAGGGTCTAATCCAAAGGATGCCAAGGTGTAGACATGGATATTTCCACGTGGTAAACAATGATTATACCCATTGGGAAATGTATGCAATTGGTGGCAGTGCTGAGCCCACAATTAACAGCCAAGGCAATAGATTCCTTGCCCCTATGAATCCTTTTGCTAAGGAGGTGACAAAAAGAGTGTTAACAGATGAATCCACATGGAAAAATTGGAATTGGAGGTCTGATGGAGACCTTATGTTGAATGGTGCCTATTTCACTTCATCAGGAGCAGCAAATGCAGCTAGCTATGCTAGAGCTTCAAGTTTGTCTGCCAAATCTTCTTCTGTGGTTGGAACTATTACCTCCACTGCTGGTGTTCTTAACTGCCGCAGGGGTGCCAAGTGTTAA 519 0.4335 MGSTAITISNNYFTHHDEVMLLGHHDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRFLAPMNPFAKEVTKRVLTDESTWKNWNWRSDGDLMLNGAYFTSSGAANAASYARASSLSAKSSSVVGTITSTAGVLNCRRGAKC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271947g00008 172 Gene3D - 1 165 IPR012334 -
Stsc271947g00008 172 PRINTS Pollen allergen Amb family signature 72 91 IPR018082 -
Stsc271947g00008 172 PRINTS Pollen allergen Amb family signature 143 166 IPR018082 -
Stsc271947g00008 172 PRINTS Pollen allergen Amb family signature 50 69 IPR018082 -
Stsc271947g00008 172 PRINTS Pollen allergen Amb family signature 114 138 IPR018082 -
Stsc271947g00008 172 PANTHER PECTATE LYASE 18-RELATED 1 169 IPR045032 GO:0030570
Stsc271947g00008 172 Pfam Pectate lyase 2 89 IPR002022 -
Stsc271947g00008 172 SUPERFAMILY Pectin lyase-like 2 172 IPR011050 -
Stsc271947g00008 172 SMART amb_all 1 95 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271947g00008 Stsc-Chr271947 55135 56574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271947g00008 1 172 Polysaccharide Lyase AT4G13710 80.233 2.84e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271947g00008 K01728 - csin:114307229 301.982