Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271946g00003 ATGGTGGTGACAGAGGCGGAGATGAACAACAACAACTCCCAGGGAGAAGTGGAATCGCCGCTACTCCAGGCGGCGGTGGTTGGGGCTGAGCAACAAGGAGGCAAGAACAACAACCACCCATTCTCGTCCCTGGGGAGACAATCCTCCATATACTCTCTGACCTTAGACGAGTTCCAGCACACACTCTGCGAGAACGGCAAGAATTTCGGTTCCATGAACATGGACGAGTTTCTTAGCAGCATTTGGAATGCTGAAGAGAACCAAGCAATCGTAAACTCTTCTCACAACAACAACAACAACGTGACTCTCAGTGAAGCTTCTTCTGCTGATAAAGCAATCATGATGAGGGAACACCAGCAGCATCAGCAGCAGCAGCAGAGTCTCCCTCGGCAAGGATCACTCACCATTCCTGCACCTCTATGCCGGAAAACCGTGGAGGAGGTTTGGTCTGAGATACATAATAAAGGACAACAGAATCAGCAGCAGCAGCAGCATCATCAGCAGAGCAAGAGCAATGGCGGAGTTCATAATAATAATAATAATAATACCGAAACTACCCATCGCCAGCCTACCTTTGGGGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGGGTAGTGAGGGAACAGTGTCCAATGCCGGTGCAACCACCACCACCACCACAACCACCAGTGACTTCTTCTCATCATCACCATCTCAATCCTCATCAGCAGCAGCAGCAGTATGGGGTGTATTCTAGTAACAACTCACCAGCAATGGCTCCTTCTTTTGTTGGAAGGACTAATGTTATTGCTGCTGGTGGTGGTGTGGTTGCGGCTGCTCCGCCTGGTACTTACCAGGCGGAGGCTTCGGGATACCCTGGGAGCGGTGGCAAGAGGGATGGTGGTGGGGGCGGAGGGTACCCTGCGGCGGGGTCTGGCGGCGGGGTATGTTATGGAGGGAGGGTGGTGAATGGAGGGGGTGGGTATGGGGTGGGGCCGTTGAGCCCGGGGTCTTCGGACGGGGTGGGAGCTGGGGAGGGGCAGTTTGGGGTTGATATGGGCGTGTTGAGGGGACGGAAGAGGATGGTGGATGGTCCCGTCGAGAAGGTGGTGGAGCGACGGCAGCGGAGGATGATCAAGAACAGAGAATCTGCCGCTAGATCTAGAGCCAGAAAACAGGCGTATACAGTTGAATTAGAAGCAGAACTCAACCAACTCAGAGAAGAGAACGCACAACTTAAACAGGCGCTGGCTGAGTTCGAGAGGAGAAGAAAGCAACAGTGTTTGGAGGAAGTGAATGTTAGAGCTCAAACCAAAGCTGAGAAGGCAACAGAGAAATTGAGAGCATTGAGAAGGAACCTAAGCTGTCCTTTGTGA 1359 0.5254 MVVTEAEMNNNNSQGEVESPLLQAAVVGAEQQGGKNNNHPFSSLGRQSSIYSLTLDEFQHTLCENGKNFGSMNMDEFLSSIWNAEENQAIVNSSHNNNNNVTLSEASSADKAIMMREHQQHQQQQQSLPRQGSLTIPAPLCRKTVEEVWSEIHNKGQQNQQQQQHHQQSKSNGGVHNNNNNNTETTHRQPTFGEMTLEDFLVKAGVVREQCPMPVQPPPPPQPPVTSSHHHHLNPHQQQQQYGVYSSNNSPAMAPSFVGRTNVIAAGGGVVAAAPPGTYQAEASGYPGSGGKRDGGGGGGYPAAGSGGGVCYGGRVVNGGGGYGVGPLSPGSSDGVGAGEGQFGVDMGVLRGRKRMVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENAQLKQALAEFERRRKQQCLEEVNVRAQTKAEKATEKLRALRRNLSCPL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271946g00003 452 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 365 417 IPR004827 GO:0003700|GO:0006355
Stsc271946g00003 452 MobiDBLite consensus disorder prediction 153 193 - -
Stsc271946g00003 452 Gene3D - 365 419 - -
Stsc271946g00003 452 MobiDBLite consensus disorder prediction 211 241 - -
Stsc271946g00003 452 SMART brlzneu 363 428 IPR004827 GO:0003700|GO:0006355
Stsc271946g00003 452 CDD bZIP_plant_BZIP46 367 421 - -
Stsc271946g00003 452 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 370 385 IPR004827 GO:0003700|GO:0006355
Stsc271946g00003 452 SUPERFAMILY Leucine zipper domain 367 416 IPR046347 GO:0003700|GO:0006355
Stsc271946g00003 452 MobiDBLite consensus disorder prediction 212 226 - -
Stsc271946g00003 452 MobiDBLite consensus disorder prediction 153 192 - -
Stsc271946g00003 452 Pfam bZIP transcription factor 367 416 IPR004827 GO:0003700|GO:0006355
Stsc271946g00003 452 Coils Coil 383 447 - -
Stsc271946g00003 452 MobiDBLite consensus disorder prediction 227 241 - -
Stsc271946g00003 452 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 365 421 - -
Stsc271946g00003 452 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 45 431 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271946g00003 Stsc-Chr271946 23674 26175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271946g00003 1 422 bZIP Transcription Factor Family AT2G36270 52.784 5.01e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc271946g00003 bZIP_1 7.7e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271946g00003 K14432 - gmx:100790948 419.853