Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271945g00003 ACAACTATAGGTAATAATAATAATAATAATAATAATCCAAACAACAACCCTCTTCAGCAACAACTGATGAACAATGAAGGGGGAGGAGTAGCTGCAGCACCTTCTTCTTCTTCTTCTTGGAATAGCAGGGCTATCAACAACAGTAATAATAACCTCAGAAACTCTGTTACTCCTATACCCCTACATAAGAGAAGCAAACTTGAAGATAGCGACGAAGATCTGTTCACGGTTCCTGATGTGGAAACAATGCTGAGTGTGCATTCAACGATGATAAATACAAATAGTAGTAACAACGTTGATCAAAGCAACACAACAGAAGACTCTCAGCTTCAAGCTGGTGGCGTTTCCGTTTCCGGGAAACGCCGCCGTGGAAGAAACCCTGTAGACAAGGAGTATAGACGCCTCAAGAGATTATTGAGGAACAGAGTTTCTGCCCAACAAGCACGGGAAAGAAAGAAGGTATATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGGAAGATAAGAATTCCAACTTAGAAGAGCGTATCTCCACGTTAATCAATGAGAACACCATGCTTCGCAAGGTTCTTATGAGTACGAGGCCTAAAGTTGATGAGAATGTTGAAGCATAG 615 0.4114 TTIGNNNNNNNNPNNNPLQQQLMNNEGGGVAAAPSSSSSWNSRAINNSNNNLRNSVTPIPLHKRSKLEDSDEDLFTVPDVETMLSVHSTMINTNSSNNVDQSNTTEDSQLQAGGVSVSGKRRRGRNPVDKEYRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELEDKNSNLEERISTLINENTMLRKVLMSTRPKVDENVEA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271945g00003 204 SMART brlzneu 129 193 IPR004827 GO:0003700|GO:0006355
Stsc271945g00003 204 MobiDBLite consensus disorder prediction 92 115 - -
Stsc271945g00003 204 MobiDBLite consensus disorder prediction 92 129 - -
Stsc271945g00003 204 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 131 194 IPR004827 GO:0003700|GO:0006355
Stsc271945g00003 204 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 136 151 IPR004827 GO:0003700|GO:0006355
Stsc271945g00003 204 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 23 200 IPR044280 GO:0000981|GO:0045944
Stsc271945g00003 204 Coils Coil 149 190 - -
Stsc271945g00003 204 FunFam Transcription factor HY5 152 193 - -
Stsc271945g00003 204 Pfam bZIP transcription factor 130 189 IPR004827 GO:0003700|GO:0006355
Stsc271945g00003 204 Gene3D Single helix bin 152 193 - -
Stsc271945g00003 204 CDD bZIP_HY5-like 143 184 - -
Stsc271945g00003 204 MobiDBLite consensus disorder prediction 1 57 - -
Stsc271945g00003 204 SUPERFAMILY Leucine zipper domain 132 191 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271945g00003 Stsc-Chr271945 14988 28187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271945g00003 95 201 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 71.963 2.41e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc271945g00003 bZIP_1 1.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271945g00003 K16241 - gmx:100783826 194.512