Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271944g00024 ATGGAAAATCCAACTACCAGCACCATGCAAGAATGTAACAATGAAAATGTCATGGCGCCTCCATCTTATCGAGGAGTTCGGAAGCGAAAATGGGGCAAATGGGTGTCCGAAATTCGCGAACCGGGGAAGAAAACTAGGATATGGTTAGGGAGCTATGAGCTACCTGAAATGGCGGCTGCGGCCTATGACGTGGCAGCGTTGCACCTTAGAGGCCACGCGGCTAGGCTCAACTTCCCTGAATTGGCTGAGAGTATGCCTCGGCCGGCGAGTTCACGAGCCGAGGACGTGCAAGCCGCGGCGCAGCAAGCCGCGTTGAGGTTCAAGACTCCTATTATGTCATCCAATAATAATTATTCATGTAGCGAGGTAGGCAGTGCCCTTAATAAAAAGAGCACTGTCCTACCTGTAAGGGTAGGGTTGTCTCCTAGCCAAATTCAGGCGATTAATGAATCTCCGTTGGACTCGCCAAAGATGTGGATGCGAATGGCTGAGGCTCTCATGTTTGGCTTCCATGATCATAATAATAATCAGCATCATGATGATTGTTACGATGATTATTATGATTATGATTATGATTATGGTATGTTGGAGTTGAGTGGATGGGAAGAAATTGAACATGAGTCTTTTTGGGACTCATGA 639 0.4726 MENPTTSTMQECNNENVMAPPSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYELPEMAAAAYDVAALHLRGHAARLNFPELAESMPRPASSRAEDVQAAAQQAALRFKTPIMSSNNNYSCSEVGSALNKKSTVLPVRVGLSPSQIQAINESPLDSPKMWMRMAEALMFGFHDHNNNQHHDDCYDDYYDYDYDYGMLELSGWEEIEHESFWDS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271944g00024 212 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Stsc271944g00024 212 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Stsc271944g00024 212 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Stsc271944g00024 212 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Stsc271944g00024 212 MobiDBLite consensus disorder prediction 1 20 - -
Stsc271944g00024 212 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Stsc271944g00024 212 MobiDBLite consensus disorder prediction 1 17 - -
Stsc271944g00024 212 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Stsc271944g00024 212 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Stsc271944g00024 212 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Stsc271944g00024 212 FunFam Ethylene-responsive transcription factor 2 22 80 - -
Stsc271944g00024 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271944g00024 Stsc-Chr271944 82336 82974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271944g00024 11 160 AP2-EREBP Transcription Factor Family AT1G71450 55.333 1.75e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc271944g00024 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271944g00024 - - gmx:100788567 234.572