Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271942g00022 ATGGGTTGGGGAAGAACGATTTACGAAGGTGTGGTGGTGGTTGGATCGCTGTGCCTTCTCGGCTGGGCGGGGCTGTGGTTCCTGAACCGCCGCCTCTACAAAGAGTACGAAGAGAAGCGCGCACTCGTTCAGATCATCTTCTCCGTCGTCTTCGCTTTCTCCTGCAATCTCCTCCAACTCGTTCTGTTCGAGATCATTCCCATTCTCTCCAAACAGGCACGTGTCATCAACTGGAAGCTCGATCTGTTCTGCTTGATTCTCCTGCTCGTGTTCATGCTCCCTTATTACCACTGTTACCTCATGCTCAAGAACAACGCCGTCAGGAACGAGAGGGCCGCACTCGGAGCCGTTATCTTCCTCTTCGCTTTCCTCTACGCCTTTTGGCGAATGGGAATTCACTTCCCTATGCCTTCCCCTGACAAAGGATTCTTCACTATGCCTCAGCTTGTTAGTCGAATTGGGGTCATTGGTGTCACCGTCATGGCTGTTCTCTCCGGTTTCGGTGCTGTTAACTTGCCCTTCAGTTACTTGTCCCTTTTCATCAGAGAGATTGAGGAGTCTGAGATCAAGTCCTTGGAAAGACAACTAATGCAGTCCATTGAGACTTGCATAGCAAAGAAGAAGAAGATTATTCTTTCCCAAATTGAGATTGACCAAACTCAAGGAGCTGACGAGAAGTTAAGTGCTAGATCATTATTCAAACGCATTGTTGGTACTGTTGTTCGATCTGTGCAAGAGGACCAAAAGGTGCAAGATATCAAAGACATGGAAGCAGAGGTAAATGCTTTGGAAGAGCTTTCAAAGCAAATGTTCTTGGAGATCTATGAGCTTCGACAAGCAAAGGAAGCAGCTGCTTATTCTCGAACTTGGAGAGGGCACATGCAGAACCTGCTTGGCTATGCTTGTTCCGCATATTGTGTGTATAAAATGATCAAGTCATTGCAAAGTGTGGTGTTCAAACAGGCTGGTTCAGTTGATCCTGTCACAATGATCATTAAAATATTCCTACAGTTCTTTGATATAGGAATAGATGCAGCCTTATTATCACAGTACATTTCATTGCTATTCATCGGAATGTTGGTTGTGATATCGGTCCGTGGATTCTTGACAAATCTAATGAAGTTCTTTTTCGCTGTTTCAAGAGTCGGAAGTGGATCTTCAAGCAATGTTGTTCTCTTTCTATCAGAGATAATGGGAATGTATTTTTTATCTTCTATTCTTTTGATCAGGAAAAGCTTAGCAACTGAATACAGGATTATTATAACAGACCACATTATACATCTCGTCAAACTGACAAACATCCTATTGATTGAAACATATTACCTAGATGCATGTATAGTTTCCAAGTCTGTGAAAGGACAATACGTTAAGATTGTTCATCAGCTTATGGTGGCGACTGAGGAATGCAGCATCCATTATTTGCTGACACTAGCACCTCAACTGAGTTATGGTAACATTGAGGGGAATATTCTGAGATATCGGGGTATCACCCAAGTCAGAAAGAAGTTTTCCAAACGCTCTACGATTCAGACTGCTGATATGAGACTTGAATCAGGGACTTGTAATGTGTGTTCAGCTCCTTGTTCATCTTGCACATATCTTAACCATTCTGTCATGGGGTCAAAGGCTGAAGAATCTTCTGATGAAAACTGTCGTTTAGGGGAGGCCAATAATCATTATTCTATGGATCGGGGCAATTTATCTTCTCCTAGGAATAAAGCTTCTGAAAGCTTGCAGCATGCTGCCAGTGAAACCAGTAACATTCTCAGTGTTAATTCTAGTCAAGATTCTATATCTGAAAATGCCCAGAGTAGGCAGGTCTTGTCAGATAAGTATCAGGACTCAAAATATTTAGAAGGCCATGATGATAACATTTCTAGTATTAGTAGAGCCAGCGATTCTCATTTAGAGAACACTAGCCATCAAAGAAACGCAGAAAGAATAAATGCTTGTAGTTCAGCTTCAGTTAGTCATGTAGGCGTAGAAGGATCTGTTAGTGCTCCATCTGTTGATACCTCTGGCTTGTCTGAGATTCCATCATCTAAAGATGTAGATACTGGGCATAGCTCATCTAAGGTACAAAGCATGAATGGACAATCTCAAAGTGGTAAATCTCTCTCAGATAGTGCAAGCTTAAGTCGCCCAGAAGGGGATTCATCACCTCGTATCCCTGAAAAGTTGTTAGAATGCCCTAATGAAAACCCGAATTCATCACTGAACAAAGAGACAGCGTCTACCCTTGTATCTGGTGAGAAATCTGTTGCCAGTATTGCCAAGGTTTCATCAGATGTTTGTCCAAAGACAGAAGCAGATACTGATAATGTTGGCGATGCTAAAGATGAAAGCTGTAAAGGTTCAGTCCATGATGGACAGCATGAGAAGACTGAGGAGCTCGTTAAATCCCGTTTTAAGCAGGAACTTCAATCTGAAGATGAGAGTGATGAATTGGATGCTGTGGAACATGATGTAAAGGTGTGTGACATATGTGGAGATGCTGGTCGAGAGGATCTACTAGCTATATGTAGTAGGTGCAGTGATGGTGCTGAGCACACCTACTGCATGCGAGAAATGCTTCAGAAGGTCCCTGAAGGAGAGTGGTTATGTGAAGAATGTAAATATATAGAGGAGACTGAAAATCAAAGGCTTGAAGCTGAGGAGAAAATAATTCATAAAGGTAGTTTAGCTTCACAAGTTTCTAACAAACGACTTTCGGAAAACATTGAAGTAGCTCTGAGTGCGGCAAAAAGGCAAGCTCTTGAATCAAGCACAGGGTCACCAAAGGCATCGAGTCCCAAAAGATTAGTTCCACTGTCTCGTGAATCTTCGTTTAAGAACTTGGATAAAGGAAAAGTGAAGCCTGGTCATCTGATGCCTATTCGTAATCATTCTGGTGGCAATGACACAGAAGTTGCTCGTTCTCCTTCCATTGGTCCCCGAAGTCAAATTCCTAAGAGTACATTGTCGAAATGTAGCTCTTTCAACAACTTGGATTCCAAGCTTAGAGTCAAAGTTGATGATGTTCCGCAGAAACCGAAATGGGCTGGTGAACAGTCTTCCAAGAATATGGAGATGCCTGCCCGGATGACAGGCAAATCAACATTATTCAAATCCTCAAGTATGGGTAGGTCAAGTACAACTGCACCAAAAGTTAAAATGCTTTCACCGAAGTGTGCAACTGCTCAGGAGTCGAAAGGACCAAAACATTTGAAAGAATCAAGTTCATTCGACAGGAAATTTCCATCTAGGACTGATCGGCCTGTTGTTAGTTCATCAATAGCTGGTTCTGTTGTGTCTACGGCTAAGGGTGATCAGAAGCTAACATCTCGTGGTGAAACCACTAAATCTTCAGCAGTATGCAACAACCGAGAATTGAAGGTTAACCAGGATGGAAAATCAAATACATCTTATAAGTCAATGAGTAATGTAAGTCAGAAGTCTTCGGAGCCTCAAGTTTGCTCAGAGGGAACATCAACCAATATTGACGAAGCTGTACAGGATGTCCTGCCTCAATCACGAGAGACAGCAAATCAGGTTGAGAAAACCAGAGGTAGTTCTAATGATCGTGTGAGGCCAGGTTTTACTAATGCTTCAAAAAATCCATTCTGTCAAAAATGTAAAGAATATGGCCATGTTCTGGAATTTTGTACAGCTGGTAATACACAGGAATCTGGAGCTGAAGTATCATTCTCTGCCTCAAGTAGTTCAACTGAGGATATGCATAAGGGTAATAAATTGAAGGCTGCAATCCAGGCTGCTCTACTTAGAAGACCTGAAATATACAAGAAAAAAGAAGTACCTAATCAAACTGATGGGGTTTCTGCATCAAGCACAAAGTTGAATTGTGAAGTCATTTCGCAAGACCAACCAATTGTGTCCAGCTCACCAAAGAATATAATATCAGCTGAAGAAACCCGGGAACAGCCAGAAATCCTTGAGAATTGTACATCCGAATCAATCAAATGTTTGTCTGATGATGATTTGAAGCAAGCTAATAGTTCTCCAACTGATTTTTGTCCTCAACCATTAAAGTTAGATTCCGTTGGCCTTGCTGCTGGAAAGCCTGTAGTAAGAGATTTGTCTAATAAAGCTTTGGCCATCCCAATTGCTATTTCGAAGATGTTGGTCATTCCAGAATATGAATATATCTGGCAGGGTGTCTTTGAAGTGCATCGAAATGGAAAGCCTCCTAACTTTTGTGCTGGAGTTCAGGCACATTTATCCTCTCGTGCTTCCCCAAAGGTCCGTGAGGAAGTGAACAAGTTTCTACCCAAAGTTACCCTGAATGAGGTTTCTCGTTTGAACACATGGCCTTCACAATTTCATCAGGTTGGCCCAAGAGAGGATCATATTGCTCTTTACTTCTTTGCCAAAGATACTGAGAGTTATGAGAAGCACTACAAGGGTCTAGTGGATCACATGATTAGAAGTGATTTAGCACTTAAAGGAACTTTTGATGGTGTTGAACTTCTCATATTCCCATCCAATCAACTTCCTGAAAATTCACAGCGCTGGAATATGTTGTTTTTCTTATGGGGTGTATTTAGGGTGAGGAGGATCTGTCATTCGGATTCAACAGAAAAAAATTGTATTCCCAGTTTGAATGCAGTGCCTGTTGAAAAGGATTCGACGACTGCTGTTGTGACCATGTCTGAAACGCGTTGCTCTGAAAAATACATAGAAAAAACAATTGCCTGTGAAGAAGTATGCCATGCAGGTCTTCCATCCAGCTATATAGACCAACCTCAGATTACACCAAGTGTGAACAATGATATCAATGACCAGACACATTTGGGTTCACAAGTAAAGTTGGAGAGGCAAGACAGTGGAGTTGACATCAAATCGACATCAATGGTTCCAATTGACAGTGCACTGTTATCCCATGAAATGAAATCCACCAGTTCATCGCTGAAACCTAGTGTACCAGAACATGGACAGTGCAGAGATTCTAAGTCTCCTGAAGCCGTGGGGACTAGTGTAAATACAAGGACTGTTGAAACAAAAACTGGTTTTGACATTTCTGTAAAGCAAGAGAAAGCCTTGTTGACAGAGTTTCCCTCTGTTGGCAAGCAAGAAAGTGGTACTCCAAGCAGTGTTATTAATCATAAAATGTCCGAGAGAGTGAAACTTGATAAAGATCAGCAAAGTCCCAATATGAAACAGAAAGCAGATGATCACTATATTGACTTGGAAGCAACTGCTTGTGATCAAGGAAAAGGTGCCGAAAGCCCTTCTATTAAACATAAAATTTCAGGGAGGATAAACAGTGATGAAGAAGGTCAGCAAAGGCCTAAGAGAAAACCAAAAGGTGTTTACTTTATTGACTTGGAGGCAACTGTTGGAGATCAAGAAACAGATACCGCAAGCAATGATAGTAAGGATAGAATTTCTGAGAGAACAAATGGTGAAGAAGATCAGCAAAGGCCCAAGAGGAAGCAGAAAGATTATCATTACATTGACTTGGAGGCACCTGTAGACAATCATGACCCAGATTCTGCAAACAGTATTTGTAAGGATAAAAGCTTAGGGAGAATGGATGGTGAAGATAAGCAATGGCCAAAGAAGAAACAAAAAGATTATCATTATATTGACTTGGAGGCAAACAATGAGGAAGGAGTTCAATATGTAGATCTTTCGGACCCAGTTATGCAGGCTCCTGCGGTCAGTGGTCAGAAACGGTATTGGAATGAGGTAAATGGAAAATTGGAAGATGGAGGAAGCTCTAGCAAGAAGCTGAAGGCAGGTTTTGGTGGGATTTTTGGGAGTTCCAGTTCCGAAGGTAGGGACTCTCTCGAAATTGGTTCATCTTCTTCAGTTGAGGGAAAAGGGTGTAAAGGAGCTTGTGAGGAGAAAATCATCCCTGGGGATGTTGGATCAATTGAAAGAACCTTCTTTCCTGTTGGTAACTCGCAGTTGGGGCTAAGCAACTCGTCACTAAAAGGGCCTCTTGAGTGCAGGGACCAATTTCATGATGCAATTCCAAATCTGGAGCTTGCTTTAAGGGGCGAAACAATACCACCTCCACCTCGTCCTCCACCTGCGCAGCGAATGCTTCCTTTCCTTGTTGGAGCAGTAGACAGGAAAAATAGCCCAGACGAGCAGGAAGATGATGATGGTGATGCTGCATCTCTTTCACTTTCTCTATCCTTTCCAAGTTCCAACAAGGACCCAAAAATACATGCTTCAAAAGCAGCAGAGGTCTTACCTGATGAGCACCGTGTGAATAGTTCGTTCCTCCTTTTTGGGAGATACACAGACAAATAA 6261 0.4217 MGWGRTIYEGVVVVGSLCLLGWAGLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKQARVINWKLDLFCLILLLVFMLPYYHCYLMLKNNAVRNERAALGAVIFLFAFLYAFWRMGIHFPMPSPDKGFFTMPQLVSRIGVIGVTVMAVLSGFGAVNLPFSYLSLFIREIEESEIKSLERQLMQSIETCIAKKKKIILSQIEIDQTQGADEKLSARSLFKRIVGTVVRSVQEDQKVQDIKDMEAEVNALEELSKQMFLEIYELRQAKEAAAYSRTWRGHMQNLLGYACSAYCVYKMIKSLQSVVFKQAGSVDPVTMIIKIFLQFFDIGIDAALLSQYISLLFIGMLVVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFLSSILLIRKSLATEYRIIITDHIIHLVKLTNILLIETYYLDACIVSKSVKGQYVKIVHQLMVATEECSIHYLLTLAPQLSYGNIEGNILRYRGITQVRKKFSKRSTIQTADMRLESGTCNVCSAPCSSCTYLNHSVMGSKAEESSDENCRLGEANNHYSMDRGNLSSPRNKASESLQHAASETSNILSVNSSQDSISENAQSRQVLSDKYQDSKYLEGHDDNISSISRASDSHLENTSHQRNAERINACSSASVSHVGVEGSVSAPSVDTSGLSEIPSSKDVDTGHSSSKVQSMNGQSQSGKSLSDSASLSRPEGDSSPRIPEKLLECPNENPNSSLNKETASTLVSGEKSVASIAKVSSDVCPKTEADTDNVGDAKDESCKGSVHDGQHEKTEELVKSRFKQELQSEDESDELDAVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLQKVPEGEWLCEECKYIEETENQRLEAEEKIIHKGSLASQVSNKRLSENIEVALSAAKRQALESSTGSPKASSPKRLVPLSRESSFKNLDKGKVKPGHLMPIRNHSGGNDTEVARSPSIGPRSQIPKSTLSKCSSFNNLDSKLRVKVDDVPQKPKWAGEQSSKNMEMPARMTGKSTLFKSSSMGRSSTTAPKVKMLSPKCATAQESKGPKHLKESSSFDRKFPSRTDRPVVSSSIAGSVVSTAKGDQKLTSRGETTKSSAVCNNRELKVNQDGKSNTSYKSMSNVSQKSSEPQVCSEGTSTNIDEAVQDVLPQSRETANQVEKTRGSSNDRVRPGFTNASKNPFCQKCKEYGHVLEFCTAGNTQESGAEVSFSASSSSTEDMHKGNKLKAAIQAALLRRPEIYKKKEVPNQTDGVSASSTKLNCEVISQDQPIVSSSPKNIISAEETREQPEILENCTSESIKCLSDDDLKQANSSPTDFCPQPLKLDSVGLAAGKPVVRDLSNKALAIPIAISKMLVIPEYEYIWQGVFEVHRNGKPPNFCAGVQAHLSSRASPKVREEVNKFLPKVTLNEVSRLNTWPSQFHQVGPREDHIALYFFAKDTESYEKHYKGLVDHMIRSDLALKGTFDGVELLIFPSNQLPENSQRWNMLFFLWGVFRVRRICHSDSTEKNCIPSLNAVPVEKDSTTAVVTMSETRCSEKYIEKTIACEEVCHAGLPSSYIDQPQITPSVNNDINDQTHLGSQVKLERQDSGVDIKSTSMVPIDSALLSHEMKSTSSSLKPSVPEHGQCRDSKSPEAVGTSVNTRTVETKTGFDISVKQEKALLTEFPSVGKQESGTPSSVINHKMSERVKLDKDQQSPNMKQKADDHYIDLEATACDQGKGAESPSIKHKISGRINSDEEGQQRPKRKPKGVYFIDLEATVGDQETDTASNDSKDRISERTNGEEDQQRPKRKQKDYHYIDLEAPVDNHDPDSANSICKDKSLGRMDGEDKQWPKKKQKDYHYIDLEANNEEGVQYVDLSDPVMQAPAVSGQKRYWNEVNGKLEDGGSSSKKLKAGFGGIFGSSSSEGRDSLEIGSSSSVEGKGCKGACEEKIIPGDVGSIERTFFPVGNSQLGLSNSSLKGPLECRDQFHDAIPNLELALRGETIPPPPRPPPAQRMLPFLVGAVDRKNSPDEQEDDDGDAASLSLSLSFPSSNKDPKIHASKAAEVLPDEHRVNSSFLLFGRYTDK 2086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1786 1856 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 612 628 - -
Stsc271942g00022 2086 Pfam Abscisic acid G-protein coupled receptor 286 420 IPR025969 -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 966 987 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 766 797 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1169 1193 - -
Stsc271942g00022 2086 Coils Coil 246 273 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1735 1856 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1063 1083 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 918 987 - -
Stsc271942g00022 2086 SUPERFAMILY FYVE/PHD zinc finger 813 874 IPR011011 -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1034 1156 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 662 716 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1750 1771 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 2022 2057 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 662 741 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 770 797 - -
Stsc271942g00022 2086 Coils Coil 182 202 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 554 646 - -
Stsc271942g00022 2086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 896 IPR013083 -
Stsc271942g00022 2086 SMART PHD_3 825 872 IPR001965 -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1687 1722 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1084 1156 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 561 611 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1632 1659 - -
Stsc271942g00022 2086 PANTHER G-PROTEIN COUPLED RECEPTOR 89-RELATED 11 423 IPR015672 -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1687 1701 - -
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1703 1722 - -
Stsc271942g00022 2086 Pfam The Golgi pH Regulator (GPHR) Family N-terminal 143 209 IPR022535 GO:0016020
Stsc271942g00022 2086 MobiDBLite consensus disorder prediction 1034 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271942g00022 Stsc-Chr271942 104991 120453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271942g00022 822 884 C2H2 Transcription Factor Family AT3G01460 33.333 5.44e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271942g00022 - - adu:107488482 2618.57