Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271942g00013 ATGATGGGAAGAAGTGGAACAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACTCCAGAAGAAGACAAAATACTAGTTGATTATATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCTAAGCTTGCTGGATTAAACAGATGCGGCAAGAGTTGCAGATTAAGATGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAATTTTCTGACGAAGAAGAACAACTCATCATCAACTTGCATGCCGTTCTCGGCAACAAGTGGGCAGCTATAGCAACTCATTTGCCAGGGAGGACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAGAAAGAAGCTTCTTCAAATGGGATTAGACCCAATCACACACCGTCCAAGAACAGATCATCTTAATCTCCTCACTAATCTGCAACACATTCTTGCTGCTGCTAACATTGTCAGCATCCTCTCAAACCCTAATCATCATGATCAAATCAACAATGCTCTAAGGCTTCAATCAGATGCAGCTAAAATCAACTTTCTTCAAAACATGCTTCAAACCATGGGTGCAACTACTTCTACTACTCCTGCACCCTCAAATTTAGAGCACCTAATCAATAATAGTAATGTTATTGGATCATCATCATACTCATTATCAGTGCCAGATAGTGTTGTTTATGAAGGTTTAGGGTTGAATTTGAATGACCATTCTAACCTTCAAAGCATTTATAATGCTTCAAATTCATCAATTGCTGCTTCTTCCTCTCAGAATCAGTTCCAAAACTTTGAAGGCAGTTATCAACAACAGATGATGATGATGATGATGAATGGTAGCAGAAACAATAATAATAATAATAGCAGTAATTGCAGCGAGTCTCAGAATTTTGATGAACAATTTGGTTCAAGAAATGATACTACTCCTACACAAACGAGTACAGTGACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTCTCAGCCTCACCTGAACGCTGTTCTTCTTCTCCAGCCAAGAATAATAATATTAAGAATAATGAAGAAAAAGAATGCTCTAATGATGATGATAATAATACTACCTTTGAAATCTGGGGAGATTTCATGGATGTGGATCCAAATGATGCTTATTGGAAAGATTTCGTTGACCAACAATCTAACCAGCCATGGTCAACAGTCCAATGA 1173 0.3845 MMGRSGTSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIATHLPGRTDNEIKNFWNTHLRKKLLQMGLDPITHRPRTDHLNLLTNLQHILAAANIVSILSNPNHHDQINNALRLQSDAAKINFLQNMLQTMGATTSTTPAPSNLEHLINNSNVIGSSSYSLSVPDSVVYEGLGLNLNDHSNLQSIYNASNSSIAASSSQNQFQNFEGSYQQQMMMMMMNGSRNNNNNNSSNCSESQNFDEQFGSRNDTTPTQTSTVTPSSSLPNLVSVSASPERCSSSPAKNNNIKNNEEKECSNDDDNNTTFEIWGDFMDVDPNDAYWKDFVDQQSNQPWSTVQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271942g00013 390 SMART sant 68 116 IPR001005 -
Stsc271942g00013 390 SMART sant 15 65 IPR001005 -
Stsc271942g00013 390 MobiDBLite consensus disorder prediction 274 354 - -
Stsc271942g00013 390 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Stsc271942g00013 390 MobiDBLite consensus disorder prediction 1 20 - -
Stsc271942g00013 390 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc271942g00013 390 FunFam Transcription factor MYB39 71 132 - -
Stsc271942g00013 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc271942g00013 390 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc271942g00013 390 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc271942g00013 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc271942g00013 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 306 - -
Stsc271942g00013 390 FunFam MYB-related transcription factor 15 68 - -
Stsc271942g00013 390 CDD SANT 71 114 IPR001005 -
Stsc271942g00013 390 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc271942g00013 390 Gene3D - 71 118 - -
Stsc271942g00013 390 CDD SANT 18 63 IPR001005 -
Stsc271942g00013 390 Gene3D - 15 68 - -
Stsc271942g00013 390 MobiDBLite consensus disorder prediction 274 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271942g00013 Stsc-Chr271942 70536 72539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271942g00013 2 379 MYB Transcription Factor Family AT5G16770 43.229 3.30e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271942g00013 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271942g00013 K09422 - gmx:547488 374.785