Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271942g00008 ATGGATATGGATGCAATGACTTATTATGCTTTAGCTTTTCTGTTAACATGTGTTATCATGCATGTTTTAAATTCACTACTAAGTAGAATATCAAACCATACACTTCCACCAGGTCCTTACCCTCTTCCCATCATTGGTAACCTCTTACAATTGGGTCAAAACCCTCACCGTTCGTTGGCCAATCTTGCAAAGATTCATGGCCCAATGATGACCTTAAAGTTTGGCCAGGTAACAACCATAATAATTTCTTCTCAAGATTTGGCCAAAGAGGTTCTTCAAACCCATGATCTGACGCTTTCCGATCGTCCCATTCCACAAGCCTTAACCGTCCTTGATCATGCTTATTATAGTGTAGGGTTCTTACCCGTTTCGCCGCTGTGGCGAAATTTAAGAAGAATATGTAATGATCAATTATTCGCTAACAAGACTCTTGATGCGAGTCAATTATTGAGGCGCAAGAAGCTTGAAGAACTTCTTAGCGATGTCTATCGAAGTAGCCAAACTGGTGAAGCGATAGATATTGGTAAAGCGGCTTTTAAAACTGCACTTAATTTTTTATCGAACACTATATTTTCCATAGATTTCGCTCATTCTATAAGTGATGCCGGAGATTACAAAGATATAGTGGTGAATATTTTGAAAGCCGTTGGATCACCAAACTTGGCTGATTTTTTTCCTTTGTTGAGGATTCTTGACCCACAAGGCATCAAAAGGAGCTATGGAATTTATATTGGGAAGTTGTTTGTCCTCTTTGACAAGTTGATCGAGGAAAGGTTGAAGGTGAGAGAAAGGGAGAATTATGTAACCAACAACGACATGCTGGATGCTTTGCTTGACATCTCTAAAGAAGAGAATAGCAGAGAGATGGACAAACAACAGATCAAACACTTGCTGCATGATTTATTTGTTGCGGGAACCGATACAACTTCATATTCATTAGAATGGGCAATGGCTGAGTTAATTCATAACCCAGATATCATGTCAAAAGCCAAAAAAGAAGTTGAAGAAGCCGTTGGAATTGGAAACCCAGTAACAGAATCAGACATTGCAACACTCCCTTACCTGCAAGCAATTATAAAAGAAACCCTACGCTTGCACCCACCAGCACCACTCTTACTTCCTAGAAAAGCTAATAAGGTTTCTGTGCAACTCATCAATGGCTACACCATTCCCAAGGGTGCACACATCATGATCAATGAGTTTGCTATTGGCAGGGATGAAGAATCATGGGAGAATCCAACCTTGTTTTCACCAGAGAGGTTTATGGTGGGAACAAAGGTTGACATTAAGGGGAAGAATTTTCAGCTGACACCATTTGGAAGTGGTAGAAGAATATGTCCTGGGTTGCCATTGGCTATGAGGATGTTGCATTTGATGTTGGGATCTTTGATTAATACTTTTGATTGGAAGCTTGAAAATGGTATGAAACCTAAAGAAATGAACATGGAGGATGTGATTGAAGGAAATGCCCTTAGAAAGAAAGATCCCTTGAGAGTTATTCCACTCAAAATTATTAATTAA 1521 0.3945 MDMDAMTYYALAFLLTCVIMHVLNSLLSRISNHTLPPGPYPLPIIGNLLQLGQNPHRSLANLAKIHGPMMTLKFGQVTTIIISSQDLAKEVLQTHDLTLSDRPIPQALTVLDHAYYSVGFLPVSPLWRNLRRICNDQLFANKTLDASQLLRRKKLEELLSDVYRSSQTGEAIDIGKAAFKTALNFLSNTIFSIDFAHSISDAGDYKDIVVNILKAVGSPNLADFFPLLRILDPQGIKRSYGIYIGKLFVLFDKLIEERLKVRERENYVTNNDMLDALLDISKEENSREMDKQQIKHLLHDLFVAGTDTTSYSLEWAMAELIHNPDIMSKAKKEVEEAVGIGNPVTESDIATLPYLQAIIKETLRLHPPAPLLLPRKANKVSVQLINGYTIPKGAHIMINEFAIGRDEESWENPTLFSPERFMVGTKVDIKGKNFQLTPFGSGRRICPGLPLAMRMLHLMLGSLINTFDWKLENGMKPKEMNMEDVIEGNALRKKDPLRVIPLKIIN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271942g00008 506 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 SUPERFAMILY Cytochrome P450 31 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
Stsc271942g00008 506 Pfam Cytochrome P450 36 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 13 503 - -
Stsc271942g00008 506 Gene3D Cytochrome P450 28 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 CDD CYP76-like 63 501 - -
Stsc271942g00008 506 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271942g00008 506 FunFam Cytochrome P450 76C4 28 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271942g00008 Stsc-Chr271942 42227 45429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271942g00008 3 503 Cytochrome P450 AT2G45550 44.531 1.79e-150 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271942g00008 - - gmx:100798291 593.578