Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271942g00005 ATGTTGTCAGTAGCTCCTTCTCTTGACAGCACCCAAACCCAGCAACAAAAACCCAATTCTACTCCCCAAAATATCCACATCTTCAAGTCTAAATTACCCGATATACCCCTCGACAACCATCTTCCTCTCCACTCTTTCTGCTTCCAAAGGCTAAATGAAATCTCTGACCGCCCATGCCTCATCATCGGCTCCGCCGGAAAAACCTACACATACGGCGACACATACCTCGCCTCTCGGAGACTCGCCGCCGGCATGTCCGCAATCGGAATTACCAAGGGCGATGTCATCATGATCCTCCTCCAGAACTCTGCGGAGTTTGTCTTCTCATTCATCGCCGCCTCCATGATCGGCGCCGTCGCCACCACTGCCAACCCGTTCTACACTCCCGCCGAGATCTTCAAGCAGATCACCGCTTCCAAGGCCAAGCTCGTCATCACACAGGCAATTGTTCTGTTGTGTGCTCTGAGAGCTGGAAGCGCGGTGTTGCTGATGCAGAAGTTCGAGATTGGAACGTTGCTGGAGCTCATTCAGAGGTTCAGGGTTTCGGTCGCGATGGTGGTGCCGCCGCTCGTGCTGGCTCTGGCGAAGAATCCGATGGTGGCGGATTATGATTTGAGCTCTATTAGATTGGTGCTGTCCGGGGCGGCGCCGCTCGGCAAGGAGCTCGAAGAGGCTCTCCGGAGCAGGGTGCCTCAGGCTGTTCTTGGACAGGGGTACGGGATGACAGAGGCAGGACCAGTGCTGTCCATGTGCTTGGGATTTGCAAAGCAACCATTCCCAACGAAATCAGGTTCATGTGGCACTGTTGTTAGAAATGCAGAGCTCAAGGTCATCGACCCTGAAACTGGTTGCTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATCCGAGGTCAACAAATCATGAAAGGGTATTTGAACGATGATAAGGCGACAACAGCAACTATCGATGTGGAGGGCTGGCTGCATACTGGTGATGTTGGTTATATAGACGATGATGATGAAATCTTCATTGTTGACAGGGTCAAGGAACTCATCAAATTTAAAGGTTTCCAGGTGCCCCCTGCAGAACTTGAAGCCCTGCTTGTAAGCCACCCCTCTATTGCAGACGCAGCTGTTGTCCCGCAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCATTCGTGGTTAGATCTAATGGCCTTGAACTCACTGAAGAGGCTGTAAAGGAATTTATAGCTAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTCATGCAATTCCAAAGTCTCCATCAGGAAAAATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAAACACCACCCTTAAGCCCTAG 1350 0.5007 MLSVAPSLDSTQTQQQKPNSTPQNIHIFKSKLPDIPLDNHLPLHSFCFQRLNEISDRPCLIIGSAGKTYTYGDTYLASRRLAAGMSAIGITKGDVIMILLQNSAEFVFSFIAASMIGAVATTANPFYTPAEIFKQITASKAKLVITQAIVLLCALRAGSAVLLMQKFEIGTLLELIQRFRVSVAMVVPPLVLALAKNPMVADYDLSSIRLVLSGAAPLGKELEEALRSRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIRGQQIMKGYLNDDKATTATIDVEGWLHTGDVGYIDDDDEIFIVDRVKELIKFKGFQVPPAELEALLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGLELTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLENTTLKP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271942g00005 449 FunFam 4-coumarate--CoA ligase 2 344 445 - -
Stsc271942g00005 449 Gene3D - 344 447 IPR045851 -
Stsc271942g00005 449 Gene3D - 19 149 IPR042099 -
Stsc271942g00005 449 SUPERFAMILY Acetyl-CoA synthetase-like 33 444 - -
Stsc271942g00005 449 Pfam AMP-binding enzyme 54 147 IPR000873 -
Stsc271942g00005 449 Pfam AMP-binding enzyme 149 348 IPR000873 -
Stsc271942g00005 449 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 149 440 - -
Stsc271942g00005 449 MobiDBLite consensus disorder prediction 1 23 - -
Stsc271942g00005 449 Pfam AMP-binding enzyme C-terminal domain 357 432 IPR025110 -
Stsc271942g00005 449 Gene3D - 150 343 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271942g00005 Stsc-Chr271942 14583 20050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271942g00005 150 410 Monolignol Biosynthesis Gene Families AT1G51680 70.115 5.87e-122 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271942g00005 K01904 - gmx:547492 533.872