Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271942g00003 ATGCCACCTCAACATTCTACAGCTTCGAATTTAGAGGATGCCACAGTATCTGAAATGGCAAATCCTCAGCAAGTTGGTGTAAATGTAGATACTGCACCCTTAGTGGAAGCTCTACCTTCCACGGCCGCATCGACTGAAGTTGAGTCAGCCCATGAGGAAGATCCTATAACTTTGGAAGGCAGCAAAGATTCTAATTTTGTTCCTGAAACCAATCCCAGTAATGAGAAGCTATCAAACAATGTAGCTACTCCATCTACAATATGCTCAACTGGAGGTAGTTTGGGAGAGCCAGCTAATGTGAAAGGGCCAGTTCTTGATAGCAACAACCGCGTGGGACTTACTGATGATTTGATGCAAGTTGGCCCAGATGTGGGCTTTGAAAGTGCTTCAGAGAATTGTGCTGAAATACTTGAGAGCAACATTCAATCGAACCTTATCTTTGGAAAAGAACGGGAGGCAGAGTCTGAGAAATTTGAATTGGATCCTTTTAGTGAAGTCCTCCCTGATCCTGGCACTAGGACTGCTCATAAGTTTCAACCCAAGATGAAGCCACGACCTAGAGTAGTCACAAAACCTGATGTTGCTTCTGTTTCATCTGGTGATACGATGTCAAGGTCTGTTGAGTTGCCTACATTTTGCATGAATGAAGTTCAATCTTTTCAGTCTAGTGGTGATGGCATTAGTATGCTAAATCAATCAAGCAATTCAACTGTACCCACGTTAGAGATTCCTATGGCAACTGATTTATCAAGTAAGTTTGATTATGTGGACTCAAGTATTCCATTCTCTAAAGACAACAATAATTTGGCAGCAGTCAGTGCTTCCCAACTGGATTCTCTCGATGCCGTGTTTCCTGATGTTGCAGTTCATAATGGAACTAGGGATTGGCCTACTAGTGTTGGTAAATCAGCTGCAGAGAGTGCAGACATTTTTGCTGGGTTGGAATCCATTGATGACTTTACCACCCAAACTGCCACTAATACAGGAAAACCAATTCTTCAATCGGAAACAGAGGAAGTTGTGGACTTGAGTCCTGGCTGCCCAGTTGATGATGTCTCAGATTATCAGTCGAAGAAAACTAACAAAGATCCAGCTTCTGAAATCCTAGTGGATGACGAACTGACAAATTCCCCAAGTAGTCCCACATTGGCTGATCTTATGCAGGACACTAATGGAAGAAAAAAGGAAGACACACTGTTGAGTTCTCTTAGGAAGCGTAAAAAATCTTCTGCCGTTAATGAGGATGAAGGTATTAAAATCTCAAGGCAACGGCAGAAGCAAGCAACTCATAAACCTGTTAACAACTCAGTGAATGAGGATCATGATAATTATGACCTTGACCCTCCCTATAATCCATATGGAGATGAACTTGAAGAGAATGATGATGAATTCGAAGTGGATGACTCCTCCAAGAAGAAGGCATCATCGACTTCAACAAAGAAATCTGTGGCTAAAAATGGAAAAGCATCTCAAAAGCATAAGAAGGCTAATGAGGATGTGGAAAATGCCAACAAAGAACCTCCTAAAAAAAAGTTCTCTCATTCAAGCAGACGAAAAAAAAGATGCGTGGACCCAGCTCTGCTGGAAATTCCTGAGGAAGAACTTGATATGCACACATTGCCTCTCAAGGATATCATTTTACTTGCAGAACACAGGGAGCGGCTGGCAAAAAAGGAGGCAGCAACTTCAAGAACATCTACCAATCAAAGTGGCGGAGATTCCCAGTATGAGGCTGGGGCTGAGGTTGGTGCTAATAGTGAAGAGGAGTACTTAGGTTCAGATGATGATAGAGAAGCAGGTGATGATCAAGACAGTGAAAGTGTTCCGCTGGCTTCCTCTTTATTCAACTATCAATCCTTCATGGAGAAGACTCCTAGGGGAAAATGGACAAAACACGACAATGAACTGTTCTATGAGGCGGTTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAACTTTTTCCTGATCGATCACGTCACCAAATTAAGTTGAAGTTCAAGAAGGAAGAGCGACAGCATCCTCTGCGATTAGCTGATGCCGTAAATAATCGTTCGAAAGATCATTCTCATTTTAAGATGTTGATTGAGAAACTGCAGCAAGCTTCAGCCAAGGCAGATCAAGACCCTGGTAAAGATGCCTCAGATTCCATGGCAGCGGAGGAGGTTGAGAATTCGGCACCTGGAACTAATGTATTCACTCTCAGTCCATTTTGTTTGTCCTCTGATATATCTTTTCTTTTGCAAATACTCTATGTTAATATTGCTTTTATCCAATACCATATATTTTTGTTGTCCAATGCCACATTTATTAGGTAA 2319 0.4191 MPPQHSTASNLEDATVSEMANPQQVGVNVDTAPLVEALPSTAASTEVESAHEEDPITLEGSKDSNFVPETNPSNEKLSNNVATPSTICSTGGSLGEPANVKGPVLDSNNRVGLTDDLMQVGPDVGFESASENCAEILESNIQSNLIFGKEREAESEKFELDPFSEVLPDPGTRTAHKFQPKMKPRPRVVTKPDVASVSSGDTMSRSVELPTFCMNEVQSFQSSGDGISMLNQSSNSTVPTLEIPMATDLSSKFDYVDSSIPFSKDNNNLAAVSASQLDSLDAVFPDVAVHNGTRDWPTSVGKSAAESADIFAGLESIDDFTTQTATNTGKPILQSETEEVVDLSPGCPVDDVSDYQSKKTNKDPASEILVDDELTNSPSSPTLADLMQDTNGRKKEDTLLSSLRKRKKSSAVNEDEGIKISRQRQKQATHKPVNNSVNEDHDNYDLDPPYNPYGDELEENDDEFEVDDSSKKKASSTSTKKSVAKNGKASQKHKKANEDVENANKEPPKKKFSHSSRRKKRCVDPALLEIPEEELDMHTLPLKDIILLAEHRERLAKKEAATSRTSTNQSGGDSQYEAGAEVGANSEEEYLGSDDDREAGDDQDSESVPLASSLFNYQSFMEKTPRGKWTKHDNELFYEAVRQFGTDFSMIQQLFPDRSRHQIKLKFKKEERQHPLRLADAVNNRSKDHSHFKMLIEKLQQASAKADQDPGKDASDSMAAEEVENSAPGTNVFTLSPFCLSSDISFLLQILYVNIAFIQYHIFLLSNATFIR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 355 369 - -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 63 93 - -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 491 510 - -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 389 423 - -
Stsc271942g00003 772 SUPERFAMILY Homeodomain-like 627 675 IPR009057 -
Stsc271942g00003 772 Coils Coil 486 506 - -
Stsc271942g00003 772 ProSiteProfiles SANT domain profile. 628 672 IPR017884 -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 556 583 - -
Stsc271942g00003 772 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 177 722 - -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 159 201 - -
Stsc271942g00003 772 Gene3D - 629 695 - -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 337 523 - -
Stsc271942g00003 772 Pfam Myb DNA-binding like 619 703 IPR039467 -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 1 107 - -
Stsc271942g00003 772 CDD SANT 628 669 IPR001005 -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 561 575 - -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 1 28 - -
Stsc271942g00003 772 SMART sant 625 673 IPR001005 -
Stsc271942g00003 772 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271942g00003 Stsc-Chr271942 7437 12597 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc271942g00003 Myb_DNA-bind_7 5.3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271942g00003 K15198 - gmx:100809837 662.144