Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271941g00016 ATGCAATCAAAAGCCACGATCCCGGTAAATGTTGGTGTAGTTCTTGACAGTAACACATGGATTGGGAAGTTGAGTCTCAGTTGCATCGAAATGGCACTCTCAGATTTATATGCTTCGCACCCTCACTATAAAACAAGGCTTATTATCAACGTAAAGGATTCTAAGTCAGAGGTGATGGATGCTGCTTTAGCAGCTCAAGACTTGATACGAAGTAAAGAGGTTAAAGCCATGATAGGGCCACAAAATTCAAGGCAGGCAAATCTTGTTATTGAAGTGGGACACAAATCACATGTTCCCATAATATCATTTTCAGCAACAAGCCCTTCTCTAACTAGTCCTCAGATACACAGTCCTTACTTCTTCCGAGTGGCACAAAACGATGCATCTCAAGTACAAGCAGTTTCGGCTATTATTCAAGCCTTTGAGTGGAACCAATTAGTGCTTATATACTCACAAGGCATATATGAGGAGGAATTAATTCCCTTCATGGCTAGAACTTTGCAAGAGGGAAATGTGCAAATTCCATATCAAATTGCAATTCCCACATTAGCAACCGACCAGATTATTTCTCAAGAGCTTTACAAATTAAGATTGATGTCTAATAGAGTCTTTGTTGTTCATGTATCACCTCAATTGGGCTCTCGTATATTCTTCATAGCAAGAGAATTGGGGATGATGAGCCAAGGCTATGCTTGGATCATCACCACCAAGATGAGTAATCAATTACAAATTTGGAATTCTTCTGTTACTGATTCAATGCAAGGTGTCTTAGGTGTGAGCAGTTATTTTCCAAGAACCAAGGAGCTTGATGACTTTGAATTAAGATGGAAGATGAAGTTTCAACAAGCAAACCCAAGTATGATATGGGCCCAAATGAATGTTTTGGGCCTATGGGCTTATGATGCAACAACAGCATTAGCTATGGCAATTGAGAAGGTTGAATTTGAATCTCTAGGGATCTCTCAGTCTCATCTTAGGGAAACATTATCCAAGATAAAATTGAATGGACTTGCTGGGGATTTTAGCTTTGTCAATGGCGACACCAATTTATCATCTTATAAAATAATCAATTTGATTGGAAATAGCGAAAGAGTTGTTGGGTATTGGACACCACAAAATGGACTGAAAAGAAATATGGAAACCACATATAGTTTTACATCAAAGAACAATTTGGGAACAATAATTTGGCCAGGTGATTGTTTTTCTGCTCCTAAAGGTTATGATGAACTTGCAAACAAGAAAGAGCTAACGGTTGGGGTTCCACTATTAAGAAATGGATTTGATGAATTAATTCTTGTGCAACATGAAGATCCTACTAACAATACAAATGTTAGAGGCTACTGCATAGATGTTTTCTTGTTGGCAATGAGATCTTTACCATACAATGTTTCAATTGAATTTATCCCTTATTACAAGCGTTCCGACCACTACAGCCCCGGGATATACTATGATGATCTGCTCCATGAAACTTACCTCGGGAAGGTTGATGCTGTGGTAGGAGATATAACAATCACTGCTAAGAGGTCCTCTTATGTAGACTTCACATTGCCATTCACAGAAAGCGGAGCTGTTTTCATTGTCCCTACAACCATTGCAAAGAATAAGACTAAGGTTTGGATTTTCTTGAGGCCTCTCACATGGCAGCTATGGCTCACAACTGGCTGTTTCTTTCTGTTCATTGCTTTTGTTGTTTGGGTGCTTGAACACCAAGGCAACCGCGAATTCAACGGTTCTACTTCAAAACAAGTTAGCACTAGCATTTGGTTTTCCTTCTCAACATTGGTTTTTGCACAAACAAACTTAACCACACAACTGACAGTTCAACAGCTGCGACCAACTGTGACCAATGTATATCAGCTTCTGCAAAATGGAGACTCAGTTGGATACCATTTTGGATCTTATGCATATGATTTTCTACGACAGTTAGGGTTTGATGATAGCAAGCTCAAGGTTTATCATAATGCACAAGAATGTGATACACTTTTTACAATAGGAAGCCAAAATGGAGGGATTTCTGCTGCTTTTGATGAAATAACATACATCAAGATTATCATGGCAAGTTATTGCTCCAAATATACCATCATGGGACCTACTTACAGATCCGAAGGCTTTGCTTTTGCATTTAGAAGAGGTTCCCCTTTAGCTGCAGAAGTTTCAAGAGCCATCTTAAATTTAACTGAGTTGAATAGAGATATGATGATAAGAATTGAAGAGAAATGGTTCAAGAATGAAAGCAATTGTCCACAGCCCTCTAATTATGATGATAATTCCAACAATAGCCTTGACCTTGATGGTTTTCGAGGACTATTCATGGTGGCAGGGTTGGCTTCATCGTCAGCCCTTATCATTCACGCTGCTGTGTTCCTTTATTGCCAGAAGAGGAGAGTCTTCATACAATTTATTGGTTCTAATGTCTCCTTATTGTTGAAAAATGTTAGAGCCATTTTCAAGAGCTTTTACCAAAAAGACCATGAAAGCTTCCCTGATTCCCAAAATGATAGAGAACAAATCTCCTCAAATAGCAATGAGATTACTGTTGCCTGA 2544 0.388 MQSKATIPVNVGVVLDSNTWIGKLSLSCIEMALSDLYASHPHYKTRLIINVKDSKSEVMDAALAAQDLIRSKEVKAMIGPQNSRQANLVIEVGHKSHVPIISFSATSPSLTSPQIHSPYFFRVAQNDASQVQAVSAIIQAFEWNQLVLIYSQGIYEEELIPFMARTLQEGNVQIPYQIAIPTLATDQIISQELYKLRLMSNRVFVVHVSPQLGSRIFFIARELGMMSQGYAWIITTKMSNQLQIWNSSVTDSMQGVLGVSSYFPRTKELDDFELRWKMKFQQANPSMIWAQMNVLGLWAYDATTALAMAIEKVEFESLGISQSHLRETLSKIKLNGLAGDFSFVNGDTNLSSYKIINLIGNSERVVGYWTPQNGLKRNMETTYSFTSKNNLGTIIWPGDCFSAPKGYDELANKKELTVGVPLLRNGFDELILVQHEDPTNNTNVRGYCIDVFLLAMRSLPYNVSIEFIPYYKRSDHYSPGIYYDDLLHETYLGKVDAVVGDITITAKRSSYVDFTLPFTESGAVFIVPTTIAKNKTKVWIFLRPLTWQLWLTTGCFFLFIAFVVWVLEHQGNREFNGSTSKQVSTSIWFSFSTLVFAQTNLTTQLTVQQLRPTVTNVYQLLQNGDSVGYHFGSYAYDFLRQLGFDDSKLKVYHNAQECDTLFTIGSQNGGISAAFDEITYIKIIMASYCSKYTIMGPTYRSEGFAFAFRRGSPLAAEVSRAILNLTELNRDMMIRIEEKWFKNESNCPQPSNYDDNSNNSLDLDGFRGLFMVAGLASSSALIIHAAVFLYCQKRRVFIQFIGSNVSLLLKNVRAIFKSFYQKDHESFPDSQNDREQISSNSNEITVA 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271941g00016 847 CDD PBP1_GABAb_receptor_plant 10 379 IPR044440 -
Stsc271941g00016 847 CDD GluR_Plant 414 741 - -
Stsc271941g00016 847 SUPERFAMILY Periplasmic binding protein-like II 392 743 - -
Stsc271941g00016 847 MobiDBLite consensus disorder prediction 824 847 - -
Stsc271941g00016 847 Gene3D - 409 537 - -
Stsc271941g00016 847 SMART GluR_14 417 743 IPR001320 GO:0015276|GO:0016020
Stsc271941g00016 847 Gene3D - 538 606 - -
Stsc271941g00016 847 FunFam Glutamate receptor 130 288 - -
Stsc271941g00016 847 Gene3D - 17 351 - -
Stsc271941g00016 847 MobiDBLite consensus disorder prediction 832 847 - -
Stsc271941g00016 847 Gene3D - 126 373 - -
Stsc271941g00016 847 Pfam Bacterial extracellular solute-binding proteins, family 3 483 742 IPR001638 -
Stsc271941g00016 847 PIRSF IGluLR_plant 598 845 IPR017103 -
Stsc271941g00016 847 PIRSF IGluLR_plant 1 600 IPR017103 -
Stsc271941g00016 847 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 822 IPR015683 -
Stsc271941g00016 847 Pfam Receptor family ligand binding region 27 360 IPR001828 -
Stsc271941g00016 847 SUPERFAMILY Periplasmic binding protein-like I 8 398 IPR028082 -
Stsc271941g00016 847 Gene3D - 607 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271941g00016 Stsc-Chr271941 119348 123809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271941g00016 9 826 Ion Channels AT2G29110 42.989 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271941g00016 K05387 - qsa:O6P43_019176 843.188