Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271941g00009 ATGTCCCAGGAAGAAAGGTTAAAGCGATACAAAGGTTTTAAGGAGGGCCATACTAGGATTCTGGTGGCTACAGATTTGGTTGGTAGGGGAATTGACATTGAACGCGTGAATATAGTTATAAACTACGACATGCCCGATTCTGCAGACACTTACTTGCACAGGGTTGGTCGAGCTGGAAGGTTTGGCACAAAAGGCCTAGCAATTACATTTGTTTCATGTGCTAATGACGTCGATGTCCTCAACAATGTTCAGTCCAGGTTTGAGGTTGATATTAAGCAACTTCCCGAGCAGATTGATACCTCTACCTACATGCCATCTTGA 321 0.4393 MSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCANDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271941g00009 106 CDD SF2_C_DEAD 1 71 - -
Stsc271941g00009 106 SMART helicmild6 1 62 IPR001650 -
Stsc271941g00009 106 Gene3D - 1 106 IPR027417 -
Stsc271941g00009 106 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 82 - -
Stsc271941g00009 106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 98 IPR027417 -
Stsc271941g00009 106 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 102 IPR001650 -
Stsc271941g00009 106 Pfam Helicase conserved C-terminal domain 1 62 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271941g00009 Stsc-Chr271941 82576 85622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271941g00009 1 106 Eukaryotic Initiation Factors Gene Family AT5G11170 89.623 1.18e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271941g00009 K12812 - qsa:O6P43_015686 211.075