Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271941g00008 ATGGGAGAAACAAAGGACGAAGGATACGAGGACGAGCTTCTTGACTACGAAGAGGAGGAAGAGAAGGTACCTGACTCCGTTGGAACCAAAGTCAACGGTGAAGCTGCCAAGAAGGGCTACGTCGGGATCCACAGTTCAGGATTCAGAGACTTCCTTCTGAAGCCAGAGCTACTTCGGGCTATTGTGGACTCTGGATTTGAGCATCCTTCCGAAGTGCAACACGAATGCATACCTCAGGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCAGTGTTTGTTCTTTCAACATTGCAGCAGATTGATCCTGTTGCAGGTCAAGTTTCTGCTCTTGTTCTGTGCCACACTAGGGAATTGGCATACCAGATATGCCATGAGTTTCAGAGGTTCAGCACTTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGAGGTGTCAACATTAAAGTTCATAAGGATCTACTGAAAAATGAATGCCCTCATATTGTTGTTGGTACTCCTGGAAGAATACTAGCACTGGCTAGGGATAAGGACCTTTCATTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGAAAAGACGTGCAAGACATTTTTAAGATGACTCCACATGATAAGCAAGTGATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCTGTCTGCAAGAAATTTATGCAAGATGTAATGTCCCATGGCCAGTTCTACTTGTATTTGAAGTCTCTTTTACATAATACTCGCATTCCCTGA 804 0.4341 MGETKDEGYEDELLDYEEEEEKVPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFQRFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDVMSHGQFYLYLKSLLHNTRIP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271941g00008 267 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 251 - -
Stsc271941g00008 267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Stsc271941g00008 267 Gene3D - 34 249 IPR027417 -
Stsc271941g00008 267 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271941g00008 267 SMART ultradead3 65 263 IPR014001 -
Stsc271941g00008 267 MobiDBLite consensus disorder prediction 1 27 - -
Stsc271941g00008 267 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Stsc271941g00008 267 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 247 - -
Stsc271941g00008 267 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Stsc271941g00008 267 CDD DEADc_DDX39 45 248 - -
Stsc271941g00008 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 247 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271941g00008 Stsc-Chr271941 79683 82377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271941g00008 1 246 Eukaryotic Initiation Factors Gene Family AT5G11200 91.093 2.40e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271941g00008 K12812 - csv:101217346 458.373