Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc271941g00008 | ATGGGAGAAACAAAGGACGAAGGATACGAGGACGAGCTTCTTGACTACGAAGAGGAGGAAGAGAAGGTACCTGACTCCGTTGGAACCAAAGTCAACGGTGAAGCTGCCAAGAAGGGCTACGTCGGGATCCACAGTTCAGGATTCAGAGACTTCCTTCTGAAGCCAGAGCTACTTCGGGCTATTGTGGACTCTGGATTTGAGCATCCTTCCGAAGTGCAACACGAATGCATACCTCAGGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCAGTGTTTGTTCTTTCAACATTGCAGCAGATTGATCCTGTTGCAGGTCAAGTTTCTGCTCTTGTTCTGTGCCACACTAGGGAATTGGCATACCAGATATGCCATGAGTTTCAGAGGTTCAGCACTTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGAGGTGTCAACATTAAAGTTCATAAGGATCTACTGAAAAATGAATGCCCTCATATTGTTGTTGGTACTCCTGGAAGAATACTAGCACTGGCTAGGGATAAGGACCTTTCATTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGAAAAGACGTGCAAGACATTTTTAAGATGACTCCACATGATAAGCAAGTGATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCTGTCTGCAAGAAATTTATGCAAGATGTAATGTCCCATGGCCAGTTCTACTTGTATTTGAAGTCTCTTTTACATAATACTCGCATTCCCTGA | 804 | 0.4341 | MGETKDEGYEDELLDYEEEEEKVPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFQRFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDVMSHGQFYLYLKSLLHNTRIP | 267 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc271941g00008 | 267 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 34 | 251 | - | - | |
Stsc271941g00008 | 267 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - | |
Stsc271941g00008 | 267 | Gene3D | - | 34 | 249 | IPR027417 | - | |
Stsc271941g00008 | 267 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Stsc271941g00008 | 267 | SMART | ultradead3 | 65 | 263 | IPR014001 | - | |
Stsc271941g00008 | 267 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Stsc271941g00008 | 267 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724 | |
Stsc271941g00008 | 267 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 45 | 247 | - | - | |
Stsc271941g00008 | 267 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc271941g00008 | 267 | CDD | DEADc_DDX39 | 45 | 248 | - | - | |
Stsc271941g00008 | 267 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 42 | 247 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc271941g00008 | Stsc-Chr271941 | 79683 | 82377 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc271941g00008 | 1 | 246 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 91.093 | 2.40e-155 | 439 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc271941g00008 | K12812 | - | csv:101217346 | 458.373 |