Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271940g00011 ATGGCTCCTCGTCATCAACAAGGTGATCCTGCTACTACTTTTGTCAGGTTCTTCAAGATCATTTGTCATTGGCATATTCGAGATGAGAAGATTAAGCTTCCAATGGAATTCACAAAAAAATGTGGACTGAAACTCCCAAATCCAGTGATTCTGAAAGTTATATATGGCAGCAAAAAGAAAGTGCATTGGACCAAAATTAATGGTTCGATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGCACTACTCTGTCTCCCATGGCCACCTTTTCTTGTTCAAATATTGTCTTGTAGCTTCATATTTTGAGGTTCAAATATTTGACAACACCACTCTTGAAATTGATTACCCTCACCCTGATGAACCCCACTATGATGATGATGATGATGTGAAAGTTCATAAATATGATGAATATCAATGGAAAGGTGTATCAAAATATGATGAAGACACAAGTGAAAGTTCTGCTGCTGTTGATGCTAGAAGAAGAGACTCACCACCAGAGAGAAAAAGTAACAACCCCAGTTTTGAGGAAGGAGATTATCTTCTAAAAGTGGAAAATGGGAGGATATGGAAAGTGATGTTCAAGACTTGGTGTGGATATGCAATGCCTTACAACAAGTACAAATTGCAAAAGGGTTGGGCCAAGTTTAGCCAAGGGAACAAGTTAGACAAAAATGATGTCTGTGTAAATTTGAGCTCATTCCCAACACCACCATGCCAACCTTTAATGTTCTCATTCACCGTAACCACCGTGGTAGATTATGCTAATTAA 774 0.3837 MAPRHQQGDPATTFVRFFKIICHWHIRDEKIKLPMEFTKKCGLKLPNPVILKVIYGSKKKVHWTKINGSIWFIGKEWKEFLEHYSVSHGHLFLFKYCLVASYFEVQIFDNTTLEIDYPHPDEPHYDDDDDVKVHKYDEYQWKGVSKYDEDTSESSAAVDARRRDSPPERKSNNPSFEEGDYLLKVENGRIWKVMFKTWCGYAMPYNKYKLQKGWAKFSQGNKLDKNDVCVNLSSFPTPPCQPLMFSFTVTTVVDYAN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271940g00011 257 MobiDBLite consensus disorder prediction 150 175 - -
Stsc271940g00011 257 MobiDBLite consensus disorder prediction 150 176 - -
Stsc271940g00011 257 CDD B3_DNA 183 230 IPR003340 GO:0003677
Stsc271940g00011 257 SMART B3_2 17 111 IPR003340 GO:0003677
Stsc271940g00011 257 Gene3D - 11 112 IPR015300 -
Stsc271940g00011 257 SUPERFAMILY DNA-binding pseudobarrel domain 177 230 IPR015300 -
Stsc271940g00011 257 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Stsc271940g00011 257 CDD B3_DNA 16 109 IPR003340 GO:0003677
Stsc271940g00011 257 ProSiteProfiles B3 DNA-binding domain profile. 182 251 IPR003340 GO:0003677
Stsc271940g00011 257 PANTHER B3 DOMAIN-CONTAINING 16 230 - -
Stsc271940g00011 257 Gene3D - 157 236 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271940g00011 Stsc-Chr271940 76231 77452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271940g00011 4 131 B3 DNA Binding Superfamily AT4G01580 35.156 1.80e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271940g00011 - - ahf:112784208 287.345