Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271940g00007 ATGCCTAGGCGTTGTGGTTGTTTTCGAATGGCCTTTTGGCCATTGATGCTATTACCCTATGTAGTTCCCATTATGGGGTTTCTACTTCTATACATAGGAAGTGGATATAAACATGGTGATTCTAATCTTACCGAATTCATCATGGGTCTCGGTATCTTTATGCTTTTGGCTTTCCTCTTTTTATTCAGTAAATTTGAGAGGCTTTTGCGTGTGTATTTGAGGGAGAATTCCCTAGAGAATAATTCTATTGAGATCACAAGAAACTTAAGAGTGGTTCCTTGGTTGGATAGCGATGATAATCTTATGATAGCTGTTGAAATAGTTAACCAAACGGCGGCGCAAGAACAACCAATCGGCTCGCCTTTTAGCCGGAGTGCGCGGGCTGCTAGGCTCGCTTTGAGGGCATTGCCACCGGCCAAGAGTTTCAAAGCGAAGAAGGAGGAAGAGGAGGCAAAGAACAATGAATTGACTGGATGGAGAGTTGATGATTATTGTTGTATTTGCTTGGAAGAGTTTAAGAATGGGGAATTGATTCAACCTTTGGGAGTGTGTGTTCATGAGTTCCATTCGGATTGTAAACTCTTGGTTGCATTCTGGAAAAATCAGTTGTCCGCTTTGTCGTGCAAATTTGGCTACATTTGTTCATTCAACAAAACAAGTTTAGTTGTAATAAGAATTAGTTATTAA 687 0.4061 MPRRCGCFRMAFWPLMLLPYVVPIMGFLLLYIGSGYKHGDSNLTEFIMGLGIFMLLAFLFLFSKFERLLRVYLRENSLENNSIEITRNLRVVPWLDSDDNLMIAVEIVNQTAAQEQPIGSPFSRSARAARLALRALPPAKSFKAKKEEEEAKNNELTGWRVDDYCCICLEEFKNGELIQPLGVCVHEFHSDCKLLVAFWKNQLSALSCKFGYICSFNKTSLVVIRISY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271940g00007 228 SUPERFAMILY RING/U-box 164 202 - -
Stsc271940g00007 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271940g00007 Stsc-Chr271940 59920 60606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271940g00007 45 192 C3H Transcription Factor Family AT2G27940 26.000 9.29e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271940g00007 - K15692 ahf:112718325 162.155