Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271940g00001 ATGGCTCAGACAAAAGTTTCGCTTGATCGGATAACTAGTTTTCTGCAGGACGAAGAGTTGCAGGAAGATGCAACTGTCGTGTTGCCACAAGGCACGACTGACACTGCCGTAGAGATTAATGATGGCGTCTTCTGCTGGGACCCTTCTTTGTCTAGGCCTACACTGTCAGGAATACATATGAAGGTCGAGAAGGGGATGCGTGTGGCTGTTTGTGGCATGGTTGGTTCTGGGAAATCAAGCTTCCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCGGGTGAAGTTAAAGTATGTGGCACTGCTGCATACGTATCCCAATCGGCATGGATACAGACAGGAAATATAGAAGAAAATATCCTCTTTGGAAATGCGATGGACAAACCAAGGTACAAGAAGGTTATTCAAGCTTGTTCACTGAAAAAGGACCTAGAGCTTTTCTCTCACGGAGACCAAACAATTATCGGTGATAGAGGTATAAATCTCAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCTCGAGCACTGTACCAAGATGCTGATATTTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGATTTGTTCAGGGAGTATGTATTGACAGCATTAGCGGAAAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATCTGATACTGGTTCTTAAAGAAGGACAAATCATACAGGCAGGAAAATATGATGAGCTTCTACAAGCTGGAACAGATTTTAAGACTCTAGTTTCAGCTCATCATGAAGCAATAGAGGCTATCGATATTCCTTCTCACTCAGATGAATCAGATGAAAATGAGAACATGTCCCCAGATAGATCTATTATGACAGAAAAGAGATCATCTGCTTCACTACTCGACATTGATGGTCTGGCAAAGGAAGTGCAAGAGGGATCGTCTGATCAGAAGGCAATCAAGGAGAAGAAGGCAAAGCGCTCAAGAAAAAAACAGCTTGTTCAAGAAGAAGAGAGGGTTAGAGGTCGAGTGAACATGAAGGTTTACTTGTCATACATGGCTGCAGCATATAAAGGCTCATTGATTCCACTCATAATTGTGGCACAGTCATTATTTCAGTTCCTTCAGATTGCTAGTAACTGGTGGATGGCTTGGGCAAATCCCCAAACAGTTGGTGATGAGCCGAAAGTAACTTCCACTGAACTTCTTCTTGTGTACATGGCCCTTGCTTTCGGCAGCTCATGTTTCATATTTGTAAGGGCTGTTCTGGTAGCTACATTTGGTCTTGCTGCTGCTCAGAAGTTATTTTTTAGCATGCTCAGATGTATTTTTCGTGCACCGATGTCTTTCTTTGACTCTACACCATCTGGAAGGATCCTGAATCGGGTTTCAGTTGATCAAAGTGTTGTGGATCTCGACATTCCTTTTAGGCTTGGAGGGTTTGCTTCAACAACAATACAGCTCATAGGAATTGTTGCTGTAATGACAACAGTTACATGGCAAGTTCTGCTCCTAGTTATCCCGATGGCCGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGAATTGTAAGCATCCAGAAATCTCCAATAATACATCTTTTTGGTGAATCAATTGCGGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTTTACCTTTTGGATTGTTTTGCAAGGCCATTTTTTTGCAGTCTTGCGGCTATTGAGTGGCTATGCTTGCGCATGGAATTACTATCCACTTTTGTGTTTGCTTTTTGTATGGTTCTACTTGTGAGTGTTCCCCATGGAAGTATTGACCCCAGCATGGCTGGACTCGCAGTGACGTATGGCCTGAATTTAAATGGACGCCTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAACAAAATTATATCTATCGAAAGGATTTATCAGTACAGCCAAGTTCCTAGTGAAGCACCTGCAATCATTGATGATTCTCGTCCTCCATCGTCATGGCCCGAGAATGGAACAATCCAAATAGTTGATTTGAAGATACGTTACAAGGAAAATCTTCCATTGGTGCTTCGGGGAATATCATGTACATTTCCTGGTGGGAAGAAGATTGGAATAGTCGGACGTACGGGCAGTGGAAAATCTACTTTAATTCAGGCATTATTCCGATTGGTTGAACCATCTCAGGGGAGTATCCTTATTGACAACACTGATATTTCGAAAATTGGCCTCCATGATCTTCGAAGCCGTCTCAGTATAATACCACAAGATCCAACCTTGTTTGAAGGCACCATACGAGGCAATCTTGATCCTCTTGGGGAGCACTCAGATAAAGCAATTTGGGAGGCACTGGATAAGTCTCAGCTTGGAGAGGTTATCCGTTCCAAAGGACAAAAGCTCGATACACCTGTGCTTGAAAATGGTGATAACTGGAGTGTAGGGCAAAGACAACTTGTTGCTCTAGGCCGAGCCCTACTTAAACAGTCAAAGATACTTGTACTTGATGAAGCAACGGCATCGGTGGATTCTGCAACAGATAATCTTATCCAAAAGATTATCCGAGAAGAGTTCAAAGAGTGCACTGTTTGCACCATTGCACATCGTATTCCTACGGTTATCGACAGTGATCTAGTTTTGGTTCTCAGTGATGGCCGGGTTGCAGAGTTTGACACTCCGTCGCGGCTATTAGAGGATAGGTCGTCCATGTTCCTAAAGTTGGTAAGCGAGTATTCATCCCGGTCGAGTGGCATACCAGATTTTTAG 2781 0.4351 MAQTKVSLDRITSFLQDEELQEDATVVLPQGTTDTAVEINDGVFCWDPSLSRPTLSGIHMKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGTAAYVSQSAWIQTGNIEENILFGNAMDKPRYKKVIQACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYVLTALAEKTVIFVTHQVEFLPAADLILVLKEGQIIQAGKYDELLQAGTDFKTLVSAHHEAIEAIDIPSHSDESDENENMSPDRSIMTEKRSSASLLDIDGLAKEVQEGSSDQKAIKEKKAKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGSLIPLIIVAQSLFQFLQIASNWWMAWANPQTVGDEPKVTSTELLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFFSMLRCIFRAPMSFFDSTPSGRILNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTTVTWQVLLLVIPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSVPHGSIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQVPSEAPAIIDDSRPPSSWPENGTIQIVDLKIRYKENLPLVLRGISCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSQGSILIDNTDISKIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLGEHSDKAIWEALDKSQLGEVIRSKGQKLDTPVLENGDNWSVGQRQLVALGRALLKQSKILVLDEATASVDSATDNLIQKIIREEFKECTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDRSSMFLKLVSEYSSRSSGIPDF 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271940g00001 926 CDD ABC_6TM_ABCC_D2 361 655 IPR044726 GO:0140359
Stsc271940g00001 926 MobiDBLite consensus disorder prediction 269 290 - -
Stsc271940g00001 926 Coils Coil 319 339 - -
Stsc271940g00001 926 Pfam ABC transporter 697 845 IPR003439 GO:0005524
Stsc271940g00001 926 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 680 914 IPR003439 GO:0005524
Stsc271940g00001 926 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 363 633 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc271940g00001 926 SUPERFAMILY ABC transporter transmembrane region 360 666 IPR036640 GO:0005524|GO:0016020
Stsc271940g00001 926 FunFam ABC transporter C family member 3 663 915 - -
Stsc271940g00001 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 911 IPR027417 -
Stsc271940g00001 926 MobiDBLite consensus disorder prediction 311 333 - -
Stsc271940g00001 926 FunFam ABC transporter C family member 5 324 661 - -
Stsc271940g00001 926 SMART AAA_5 64 245 IPR003593 GO:0016887
Stsc271940g00001 926 SMART AAA_5 706 891 IPR003593 GO:0016887
Stsc271940g00001 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 259 IPR027417 -
Stsc271940g00001 926 ProSitePatterns ABC transporters family signature. 162 176 IPR017871 GO:0005524|GO:0016887
Stsc271940g00001 926 CDD ABCC_MRP_domain2 678 898 - -
Stsc271940g00001 926 Gene3D ABC transporter type 1, transmembrane domain 322 661 IPR036640 GO:0005524|GO:0016020
Stsc271940g00001 926 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 917 - -
Stsc271940g00001 926 MobiDBLite consensus disorder prediction 269 288 - -
Stsc271940g00001 926 FunFam ABC transporter C family member 5 22 269 - -
Stsc271940g00001 926 Gene3D - 663 915 IPR027417 -
Stsc271940g00001 926 Gene3D - 4 283 IPR027417 -
Stsc271940g00001 926 CDD ABCC_MRP_domain1 37 237 - -
Stsc271940g00001 926 Pfam ABC transporter transmembrane region 363 603 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc271940g00001 926 Pfam ABC transporter 55 189 IPR003439 GO:0005524
Stsc271940g00001 926 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 260 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271940g00001 Stsc-Chr271940 4592 11582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271940g00001 696 913 Calmodulin-binding Proteins AT2G36910 34.545 1.18e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271940g00001 - - gmx:100781010 1610.12