Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271937g00009 ATGGATCCCAAGGGCTCAAAGCAGCCACAGGAGCCACCACCACCACCACCACAATCACAACCACAACCAAACAACAACAACAACTTCCTCACCTCCACCGCCATGGGAGAGAACAAGCCATCATCGGAACCTAAAGATTTCCAGATTGTAGTAGCATCGGAGAAAGAAGAGAACAACAACAACAACAGCAGCAGCAACAAGAAACAGCAATCTTCGCAGCAGTTAGCGCCAAAGAGAAGCTCGAACAAAGACAGACACACGAAGGTTGAAGGAAGAGGAAGAAGGATAAGGATGCCAGCTCTCTGCGCCGCAAGGATCTTCCAGTTGACCAGAGAATTAGGCCACAAATCTGACGGCGAAACAATACAGTGGCTCCTCCAACAAGCCGAGCCTTCAATTATCGCCGCCACCGGCACCGGCACAATCCCAGCCTCCGCCCTCTCCGCTGCCGGAAACTCCCTGTCCTCGCACCAAGTACCACCACCATCATCGCTCTCCGCAGGGTTACATCAAAAGATTGATGAATTAGGAGGCTCAACTAGTAGAACCAGTTGGGCAACAATGGTTGGAGTTGGCAATTTAGTTGGAAGACCTCATCCCCACCATCAAGTGGCCGCAGCCGCGACGGCGGGGCTATGGCCACATCATCATATACCTGGATATGCTGGACAATCCAGTGCTGCTGCTTCTGAAGGATCGTCGAATTACCTTCAAAAGATTGGGTTTGCAGGTTTTGACTTTCCGGTTCCGGGTGGTGGTGGTGGTGGTGGCGGCATGGGTGCTATGAGCTTTACTTCAATTTTGGGTGGTGCACAGCAACAGATGCCGGGTTTAGAGCTTGGTTTGTCACAAGATGCACATATTGGGGTTATAAATCAACAGGCTTTGACTCAGATTTACCAGCAGATGGGTCAGCCTAGAGTGCATCAGGACCATCAAGAACACCAACACCAGCACCACCAGCACCATCAGCAGCAGCAGCAGACTCCTTCTTCTAAGGATGATTCTCAAGGCTCTGGACAGTAG 1026 0.5127 MDPKGSKQPQEPPPPPPQSQPQPNNNNNFLTSTAMGENKPSSEPKDFQIVVASEKEENNNNNSSSNKKQQSSQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALSAAGNSLSSHQVPPPSSLSAGLHQKIDELGGSTSRTSWATMVGVGNLVGRPHPHHQVAAAATAGLWPHHHIPGYAGQSSAAASEGSSNYLQKIGFAGFDFPVPGGGGGGGGMGAMSFTSILGGAQQQMPGLELGLSQDAHIGVINQQALTQIYQQMGQPRVHQDHQEHQHQHHQHHQQQQQTPSSKDDSQGSGQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 79 95 - -
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 23 39 - -
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271937g00009 341 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 1 96 - -
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 53 78 - -
Stsc271937g00009 341 Pfam TCP family transcription factor 81 226 IPR017887 -
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 323 341 - -
Stsc271937g00009 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 336 IPR005333 GO:0003700
Stsc271937g00009 341 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271937g00009 Stsc-Chr271937 71166 72740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271937g00009 39 341 TCP Transcription Factor Family AT3G27010 54.902 3.46e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc271937g00009 TCP 8.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271937g00009 - - aip:107604999 397.127