Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271937g00007 ATGGGAGGAGTTCTGCTGATCGAGGACTTTGGGATGAGCTCGTTGAGGAACAATGTGCTCGAACAGGGGGGAGAACAACTTAGCTTCCACAAGAATCTTCAACGTGGTTCCAATCTCCAAGGAACGGCGGGGGGTGGACCTGCAAGCGTTGATGGCAAGTTTCTAAATTGGAGGCAGAGGATTCAGATTGCATTGGATGTGGCCATAGGATTTGATTATCTTCGCAACTTCACTTCTCCTCCATATATTCACAAAGATCTCAAGTGTGGCAACATTCTTTTGGACAGTGATTTAAGGGCAAAGGTTGCAAAGGACGAATAA 321 0.4642 MGGVLLIEDFGMSSLRNNVLEQGGEQLSFHKNLQRGSNLQGTAGGGPASVDGKFLNWRQRIQIALDVAIGFDYLRNFTSPPYIHKDLKCGNILLDSDLRAKVAKDE 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271937g00007 106 SUPERFAMILY Protein kinase-like (PK-like) 52 103 IPR011009 -
Stsc271937g00007 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271937g00007 106 Gene3D Transferase(Phosphotransferase) domain 1 45 104 - -
Stsc271937g00007 106 Pfam Protein tyrosine and serine/threonine kinase 36 103 IPR001245 GO:0004672|GO:0006468
Stsc271937g00007 106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
Stsc271937g00007 106 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 51 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271937g00007 Stsc-Chr271937 48750 52414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271937g00007 53 103 Receptor kinase-like Gene Family AT2G33580 58.824 1.25e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc271937g00007 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271937g00007 - - aip:107626052 90.1225