Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271935g00012 ATGGCTTCTGCTTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCTTCCCCAAGTTCTCAGAAGAATGGATCACAGTTGGGAACAACAAAAGCTTCATTCCTTAGTGGAAGGAAGCTGAAGTTGAAGAACTTGACAGCACCAATAAGTGGAGCAAGATCCACCACCACAGTGTGTGTAGCAGCTGATCCTGATAGGCCTCTTTGGTTCCCCGGCAGCACTCCTCCGCCGTGGCTCGACGGCAGCCTCCCCGGAGACTTTGGATTTGATCCTCTAGGACTTGGATCTGACCCTGAGAGTCTAAGATGGAATGTTCAAGCAGAGCTTGTTCACTGCAGGTGGGCTATGTTAGGCGCCGCCGGAATCTTCATCCCGGAATTCCTAACCAAGATTGGTATCCTAAACACACCTTCATGGTACACTGCTGGGGAGCAAGAGTACTTCACAGACACCACCACACTCTTCATAATTGAACTCATCTTCATCGGCTGGGCCGAGGGACGAAGATGGGCTGATATCATCAAGCCAGGCTGTGTTAACACTGACCCTATCTTCCCTAACAACAAGCTCACCGGAACCGATGTAGGGTACCCTGGTGGCCTATGGTTTGACCCTCTCGGATGGGGAAGCGGTTCGCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGAAGGTTGGCCATGTTAGCTGTGATGGGAGCATGGTTCCAGCACATTTACACCGGCACCGGCCCTATCGACAACCTCTTTGCTCACCTTGCTGATCCCGGCCATGCTACTATTTTCGCCGCTTTCGCCCCCAAGTGA 816 0.5184 MASACASSAIAAVAISSPSSQKNGSQLGTTKASFLSGRKLKLKNLTAPISGARSTTTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFAPK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271935g00012 271 Gene3D Chlorophyll a/b binding protein domain 76 261 - -
Stsc271935g00012 271 FunFam Chlorophyll a-b binding protein, chloroplastic 76 261 - -
Stsc271935g00012 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 26 267 IPR001344 GO:0009765|GO:0016020
Stsc271935g00012 271 Pfam Chlorophyll A-B binding protein 75 241 IPR022796 -
Stsc271935g00012 271 SUPERFAMILY Chlorophyll a-b binding protein 61 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271935g00012 Stsc-Chr271935 118179 120501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271935g00012 46 271 Chloroplast and Mitochondria Gene Families AT3G61470 88.053 1.50e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271935g00012 K08908 - gmx:100802138 513.072