Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271934g00019 ATGGATAGAAAGCAAGAACAAGAAAAAGGCATTGATGTTACTCTGATATCTCCCACCAACAAAGTTCCGAAGGCAGTTTCGCCGGTTTCCTCTGCTGCCGAGGGGGAGGCCTTAAGGCGGCCGCGTGGCAGGCCTGCTGGCTCCAAGAACAAGCCGAAGCCACCGATAATCGTGACGAGGGACAGTGCTAATGCACTCAAGGCTCATGCTATGGAAGTAAGCTCTGGCTGTGATGTGAATGAGAGCTTGTTGAACTTTGCAAGGAGGAAGCAGAGAGGCCTCTGCATACTAAGTGGAACTGGCTGTGTAACAAATGTGACTCTGCGCCAACCGGCCTCATCCGGTGCCATCGTGACTCTTCACGGCCGATTCGAGATCCTCTCGTTGCTGGGGTCAATCCTTCCCCCACCAGCACCACCAGGTATCACCGGCCTCACAATTTACTTGGCTGGTGCTCAGGGGCAAGTTGTAGGAGGTGCTGTTGTTGGTGCCTTGATTGCTTCTGGACCTGTTGTCATCATGGCTGCATCATTCATGCATGCTACCTTCGACCGCCTGCCATTGGAAGACGAAGAACTCGCGGCTGCGATGCAGAATCAGCATTACCAAAATGGACGCGCCGCACATCATCTCGATATCTCTGACTTGTATGCAATGCCACAGAACCTTCTCACCAATGGAACAATGGCACCAGAGATATATTCTTGGGCACCAGGGAGGAACTTGTCTAAGAGCTGA 738 0.5244 MDRKQEQEKGIDVTLISPTNKVPKAVSPVSSAAEGEALRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILSGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDEELAAAMQNQHYQNGRAAHHLDISDLYAMPQNLLTNGTMAPEIYSWAPGRNLSKS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271934g00019 245 FunFam AT-hook motif nuclear-localized protein 66 207 - -
Stsc271934g00019 245 Gene3D - 67 203 - -
Stsc271934g00019 245 SUPERFAMILY AF0104/ALDC/Ptd012-like 63 195 - -
Stsc271934g00019 245 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 178 IPR005175 -
Stsc271934g00019 245 ProSiteProfiles PPC domain profile profile. 63 201 IPR005175 -
Stsc271934g00019 245 CDD DUF296 69 149 IPR005175 -
Stsc271934g00019 245 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 206 IPR014476 GO:0003680
Stsc271934g00019 245 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271934g00019 Stsc-Chr271934 119003 119740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271934g00019 22 244 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 74.667 3.51e-106 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271934g00019 - - gmx:100804941 389.037