Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271934g00014 ATGGACAAACATTCTGGGGATTCTGCGCCGGCTCATGGCGCTACAGGTTCATCTGGGATTGCCTCACTTAATGTTGGTAAAAAAGTGGGAAGCAGCGCGTGGGGGATACCACGTGGCGGCACTGCTGCATTTCATGCATCAACCGACACTAGCTTGTTCTCCAGTTCGCTTCCTGTTCTTGGGCATGAAAAGTTAAATTTGACTGGTTCAGGGCGTTATGATCAATCTGCTGATGATAACTGGCCGAGATTAGGAAAAGTTCATAAAGATGATGCGGTGCATGATGCACTTGAAGATATGGAAATGAAAGCAGTTGGAAAGATGCTTCCTGATGATGAAGATGAATTATTAGCTGGGATAATGGAAGATTTCGACCTTACCAGGTTGCCGAGCCAACTAGAGGATCTGGATGAGAATGATCTTTTTGGAAGTGTAGGAGGTTTTGAAATGGATTTTGAATCCCAAGAGAGCCTTGGTATTGGTATATCGAAAATGAACTTGTCTGATGGAGTTCCTTCAGCTGGTATCGGTCAATATGCTGCACTCCCGAATGGTGTGGGAGCAGTGGCCGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACCTTGTTTGTGCGGAACATCAACAGTAATGTGGAGGACTCTGAATTAAGATTGCTATTTGAGCAATATGGGGATATCAGAACATTATACACTGCTTGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACAGCAATGCGTGCTTTGCAGAACAAGCCTTTGAGAAGAAGAAAACTTGATATTCATTTTTCAATCCCTAAGGATAACCCTTCTGAAAAGGATATCAACCAAGGAACACTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGATCTTCGCCAAATATTTGGGGCTTATGGAGAAGTCAAAGAGATTAGGGAAACACCACATAAAAGACACCATAAATTTATTGAGTTTTATGATGTTAGAGCAGCAGAGGCTGCTCTTAAAGCATTGAATAGAAGTGATATTGCTGGAAAACGTATCAAACTTGAACCCAGCCGTCCAGAGTTGGAGCAAGATGATGCTCGAACTTTCAGACATCATGTGGGTTCGCCGATAGCTAGTTCTCCTCCTGGTAACTGGGCACAATTTGGTAGTCCGGTTGAACATAGTCCATTACATTCTTTTAGCAAATCCCCGGGTTTGACTATTGGCAACCCGATGAATACCAATCAAATGTCTGGATTGGCTGCAATTCTTTCGCCACATGCATCGACCTCTTCAAAGATTGCACCGATTGGTAAGGACCCTGGAAGAACTAATAATCCGAATCAGATATTTGGAAGCTCTGGACCAATACAAGGAGCAGGCTTTCAGCATTCTATCTCCTTCCCTGATAAAAAAGTTACTGCAAGTCCTAGGCCTATATCTACCGTTGGCGAATCAAGTTCAAGCTCTTCGAGTATTGGAATGTTATCTGGTCCTCAATTCCTGTGGGGAAGTCCAAATACGTACTCGGAGCATTCAAACACATCTGTGTGGTCTTCATCATCTCAGGGCCTTCCATTTACTTCTAGTGGACAAAGGCAAGGTTTCCCTTATAATAATCGGCAGAATTCTTTTCTTGGTTCTCACCTACATCACCATGTTGGTTCTGCTCCATCTGGCCTTACTTTTGATAGGCAGTTTGGTTACTTTCCTGAGTCACACGAAACTTCAATCAAGAGCTCAAATGCATTTGGGAGTTTAAATCATGGTGATGGGAATTTCTTGATGAACATGGGTCCTCATGCATCTCTAGGAGCTGGTGTTGGCCTTTCAGGAAATGCAACTGAAATTGGTTCGCCCAATTTCAGAATGGTGTCACCACTGCCTAGGCATGGTTCATTGTTCCTCGGAAATGGTTCATATTCTGGACTAGGAGCAACCAACTCTGAGGGATTAAGTGACCGTGGTCGAAGTAGGCGACCTGATAATAATGGGAACCAAATTGATGGCAAGAAGCAGTACCAGCTTGATCTAGACAAAATTATGAGCGGAGAAGACACAAGGACTACGTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGACGAGGATCATATGGGAAGTTACGACTTCTTGTATTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGCTATGCTTTCATCAATATGGTGTCTCCATCACACATCATTCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAAAAGTTCAACAGTGAAAAAGTTGCTTCGCTAGCTTATGCACGAATCCAGGGAAAGGGTGCACTTGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAACGGTGTCGACCAATTCTCTTTCATTCGGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTCACAAGCAATTTGAACATATGTATTCGTCAACCAGATGGGTCTTACTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTCGGATGAAAACTAG 2535 0.4312 MDKHSGDSAPAHGATGSSGIASLNVGKKVGSSAWGIPRGGTAAFHASTDTSLFSSSLPVLGHEKLNLTGSGRYDQSADDNWPRLGKVHKDDAVHDALEDMEMKAVGKMLPDDEDELLAGIMEDFDLTRLPSQLEDLDENDLFGSVGGFEMDFESQESLGIGISKMNLSDGVPSAGIGQYAALPNGVGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPELEQDDARTFRHHVGSPIASSPPGNWAQFGSPVEHSPLHSFSKSPGLTIGNPMNTNQMSGLAAILSPHASTSSKIAPIGKDPGRTNNPNQIFGSSGPIQGAGFQHSISFPDKKVTASPRPISTVGESSSSSSSIGMLSGPQFLWGSPNTYSEHSNTSVWSSSSQGLPFTSSGQRQGFPYNNRQNSFLGSHLHHHVGSAPSGLTFDRQFGYFPESHETSIKSSNAFGSLNHGDGNFLMNMGPHASLGAGVGLSGNATEIGSPNFRMVSPLPRHGSLFLGNGSYSGLGATNSEGLSDRGRSRRPDNNGNQIDGKKQYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDEDHMGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFLTSNLNICIRQPDGSYSGDLLESPKGNSDEN 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271934g00014 844 Pfam RNA recognition motif 2 688 784 IPR007201 -
Stsc271934g00014 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 359 IPR000504 GO:0003723
Stsc271934g00014 844 SMART rrm1_1 202 270 IPR000504 GO:0003723
Stsc271934g00014 844 SMART rrm1_1 690 766 IPR000504 GO:0003723
Stsc271934g00014 844 SMART rrm1_1 287 355 IPR000504 GO:0003723
Stsc271934g00014 844 CDD RRM2_MEI2_like 285 355 - -
Stsc271934g00014 844 SUPERFAMILY RNA-binding domain, RBD 690 774 IPR035979 GO:0003676
Stsc271934g00014 844 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 274 IPR000504 GO:0003723
Stsc271934g00014 844 PANTHER RNA RECOGNITION MOTIF-CONTAINING 62 806 - -
Stsc271934g00014 844 Gene3D - 190 284 IPR012677 -
Stsc271934g00014 844 CDD RRM1_MEI2_like 200 276 IPR034453 -
Stsc271934g00014 844 MobiDBLite consensus disorder prediction 513 541 - -
Stsc271934g00014 844 Gene3D - 285 376 IPR012677 -
Stsc271934g00014 844 FunFam MEI2-like protein 5 isoform 2 190 284 - -
Stsc271934g00014 844 MobiDBLite consensus disorder prediction 470 492 - -
Stsc271934g00014 844 MobiDBLite consensus disorder prediction 431 456 - -
Stsc271934g00014 844 MobiDBLite consensus disorder prediction 646 670 - -
Stsc271934g00014 844 FunFam Protein MEI2-like 1 285 375 - -
Stsc271934g00014 844 MobiDBLite consensus disorder prediction 1 23 - -
Stsc271934g00014 844 CDD RRM3_MEI2_like 691 776 IPR034454 -
Stsc271934g00014 844 SUPERFAMILY RNA-binding domain, RBD 198 359 IPR035979 GO:0003676
Stsc271934g00014 844 MobiDBLite consensus disorder prediction 442 456 - -
Stsc271934g00014 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 353 IPR000504 GO:0003723
Stsc271934g00014 844 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271934g00014 Stsc-Chr271934 91319 96110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271934g00014 140 412 Eukaryotic Initiation Factors Gene Family AT1G71770 23.301 7.69e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271934g00014 - - gmx:100812324 1350.11