Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271934g00013 ATGCAGCAAGATCAAAGAAAAAAGAGTTCAACAGAGATGGAGTTTTTCTCCGATTATGGCGATGCCAGCCGGTACAAAATTCAAGAAGTCGTTGGGAAAGGGAGTTATGGTGTTGTATGTTCAGCCATTGACACTCTCACCGGGGAAAAAGTGGCAATAAAAAAGATTCATGATATATTTGAGCATATATCCGATGCTGCACGCATTCTCCGGGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATCAAACATGTCATGCTGCCTCCTTCTAGAAGGGAATTTAAGGACATTTACGTCGTTTTCGAGCTTATGGAGTCGGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAGGAGCACTATCAATTTTTCCTTTACCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCAAGAGTCGCTTTCACCGACACACCCACAACAGTATTTTGGACGGATTACGTTGCGACAAGGTGGTATAGAGCACCGGAGCTTTGTGGATCATTTTACTCAAAGTATACTCCGGCAATTGACATATGGAGTATAGGTTGCATCTTTGCAGAAGTATTATTAGGAAAGCCGCTTTTCCCTGGAAAAAATGTTGTCCATCAGTTGGATCTGATGACTGATCTGCTTGGAACTCCTTCTCTGGATACTATATCCCGGGTACGCAATGATAAGGCCAGGAGATACCTAACTAGTATGCGGAAGAAGCAGCCTGTGCCATTTGCACAGAAGTTTCCTAATGCAGATCCTTTAGGACTACGACTACTTGAAAGATTACTCGCCTTTGATCCGAAAGACAGGCCTACTGCTCAAGAGGCATTGGCTGATCCTTACTTTAAGGGATTAGCAAAGGTGGAGAGGGAACCATCCTGTCATCCTATCACGAAAATGGAGTTCGAATTTGAAAGGCGAAGGGTCACAAAGGAAGAAATCCGAGAGCTAATTTTCCGTGAGATTTTAGAGTACCATCCCCAACTATTGAAAGACTACATAAATGGAACAGAGAGGGCTAATTTCCTTTATCCTAGTGCTGTTGATCAATTCAAAAAGCAGTTTTCTCATCTTGAGGAAAATGGTGGCAAAAGTGGTCCAGTTATGCCACTCGAAAGAAAGCATGTATCGCTTCCAAGGTCAACGATTGTACATTCAAATATGGCAACCCAAAAAGAGCATTCGAATATTGCTTCGAGCAAAAACCGACAACTGGCCGAGGAACAAAGAATTCCACCAGGTATGTGA 1350 0.4193 MQQDQRKKSSTEMEFFSDYGDASRYKIQEVVGKGSYGVVCSAIDTLTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHVMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFTDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLLGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVPFAQKFPNADPLGLRLLERLLAFDPKDRPTAQEALADPYFKGLAKVEREPSCHPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYINGTERANFLYPSAVDQFKKQFSHLEENGGKSGPVMPLERKHVSLPRSTIVHSNMATQKEHSNIASSKNRQLAEEQRIPPGM 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271934g00013 449 MobiDBLite consensus disorder prediction 425 449 - -
Stsc271934g00013 449 FunFam Mitogen-activated protein kinase 15 119 - -
Stsc271934g00013 449 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271934g00013 449 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Stsc271934g00013 449 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Stsc271934g00013 449 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Stsc271934g00013 449 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 352 - -
Stsc271934g00013 449 CDD STKc_TDY_MAPK 24 361 - -
Stsc271934g00013 449 MobiDBLite consensus disorder prediction 425 440 - -
Stsc271934g00013 449 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271934g00013 449 FunFam Mitogen-activated protein kinase 111 339 - -
Stsc271934g00013 449 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Stsc271934g00013 449 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc271934g00013 449 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271934g00013 Stsc-Chr271934 78044 83302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271934g00013 1 446 MAP Kinase Gene Family AT2G42880 86.577 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc271934g00013 Pkinase 2.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271934g00013 - - aprc:113848523 817.379