Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271933g00017 ATGGCAAAGAAGAAGAATCCCCACGTGTATATGGATGTGTCTATAGATGGAGATCCAGTGGAGAGGATGGTTTTTGAGCTCTTCTATGACATTGCTCCAAAGACTGCAGAAAATTTTCGTGCTCTGTGTACAGGAGAAAAAGGAGTTAGCCCAAATACTGGGAAATCACTACACTACAAGGGTTCTTTCTTCCATCACATTTTGAAAGGCTCTGTCGTGCGGGGTGGTGATTTTGTCAATCGAAACGGGACTGGTGGGGAAAGCATATATGGTTCAAAGTTTCCAGATGAGTCACCTAGGCTGAAGCATGATTCTCCAGGCCTTTTATCAATGGCAATTGCTGATCGTGAAACACTGGGTTCTCATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGAAAACATGTAGTCTTTGGCAAGCTTGTCCAAGGGCATAATGTGTTGAAGAAAATTGAAGATACTGGCGATGAAGAAGGACATCCAACTGTGACCGTTAAAATAATTAATTGTGGTGAACTCAGTGAGGATGGAAAGAAGATAAATAAATCTGAAGCCAATAGTCAAGAAGTACAGCGTAAGGGAAAGCACAAAAAATCTTCAAGAGACAGAAGAAAAAGGAGAAAATACTACTCATCAGATTCTGAGAGCTCTGATTCAGACATGGAATCTTCGGAAAGTGATAGTGATTCTGAGTCAGATGTTTCTTCATCATCTTACACTAGTTCCTCTAGTGATGACAGGCGAAGAAAGAGAAAGAGGTCTTCGAGGAAAGACAAACATAGACGTGGAAAACGAAGAGATAAACGCCGAGATAAGAGGCGCAGGAAACGTGACAAGAGGTCAAAACGAAAATCAAAAAGGGAATCTGGTAGTCTAACTGATTCGGATAGTGGAACTAAAAGTGACAATAGCCTTGATAGCAAAAGTCAAGCTGGTGGGAAAGATCAGAAGCATATAGATCATGTGCAGAAAAATGCTGAAGATCAGTCTCCGTTAAATGTGGAGAATGAATTGCCTCTTGAACATCGGAAAAAACGGGAGGAACTGGATATGGTAGAGGAAGCACTTCCAAAGGAGAATGGAGTGCGGCGCAGCAATGGCATAGGAGCCAACCATCGATCTGACAGAAGTGAAGAAAGGCAGCCTGATGTGGTTGATGATCATCCTGGAAAATCTAGGAGTCAAAGCATTAGTCCTAAGCGAGCTGTGAGTAAGAGTATGAGTATTAGTCCCAGGGGTGGGAACAGAAGCCCAAGTCCTGACAAGAGTTTGAGTAGAAGTCCAAGTCGTAGTAGAAGCCCTCCTGCTCCATCAAGGCGGAGTTTGAGCAGGAGTCCTGTTAGAAGCATAAGCAGAAGTCCCGTTAGACAGACAAGCAGAAGTCCAGACCGAAGCATCAGCAGAAGCCCAGTGAGGGTTAGGAAGGGGAGAAGTGTCAGTAGAAGCCCCATCAGGACTCGCAATCATAGAAGTATTAGTAGAAGCTCAGGGAGAATCCGTGATCGCAGTGTCAGTAGAAGTCCTGTGAGAACCCGTGATCGCAGAAGTATCAGTAGAAGCCCTGTGAGAAACCGTGATCGCAGAAGTATCAGTAGAAGCCCTGTGAGAGCGCGTGATCGTGGAAGTGTCAGCCGGAGCCCTGTGAGATCCCATTCTCGCAGTCATCGTAGCAGGAGTTCTCCTAGACCACCACCGCGAAGAACAATCAGTAGGAGCCCTGTGCGAGGGTCAAGAAAGAGCATAAGCCGGAGTCCAGTTAGGTCACCTGCCAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCTTTGAGAAGTGTTAGTAGAAGCCCTGTCAGAGCTCCCAGTAGAAGTGATCGCCGCAGCTATTCTAGGAGTCGCAGCCCTGTCCGTAGGACAAGGACACCTCGTGGTAGGAGTGTTTCAAGAAGTGTCTCACCTGATGCTTCACCAAAGCGAATCAGAAGGGGAAGAGGTTTTAGTGAACGATATTCTTATGCTAGAAGGTATAAAACCCCTTCTCGTTCTCCGGTGAGGTCATACCGCTACAATGGTAGAAGTGACCGTGACAGATACTCAGGTTATAGGAGGTATTCCCCCAGACGTTACAGGAGCCCACCACCACGTGCAAGAACTCCCCCAAGATACCGAGGCAGGAGGAGCAGGACACCTGTATCACGCAGCCCTCGTTACCGCAGTCGACGGTATAGCAGAAGCCGTAGCCCTATTCGTAGCCGTTCGCCGGTTGAGCCATATCGAGCTCATGTCTCTCCTCGGGTGGAGAGGCGCATGTCCTCATCTCGGAGCAGGAGTCCATCAAGATCAAGGTCTTCTGTGGAATCGCAATCTCCACGAAAAGCAAGCAGAATCAACAGATCAAGGTCATCATCCGGAAGTCCAAATGGAAAGAAAGGCCTAGTCTCTTATGAAGATGGTTCTCCTGACTCGAGCCCGAGGTAA 2460 0.4699 MAKKKNPHVYMDVSIDGDPVERMVFELFYDIAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHHILKGSVVRGGDFVNRNGTGGESIYGSKFPDESPRLKHDSPGLLSMAIADRETLGSHFIITLKADHHLDRKHVVFGKLVQGHNVLKKIEDTGDEEGHPTVTVKIINCGELSEDGKKINKSEANSQEVQRKGKHKKSSRDRRKRRKYYSSDSESSDSDMESSESDSDSESDVSSSSYTSSSSDDRRRKRKRSSRKDKHRRGKRRDKRRDKRRRKRDKRSKRKSKRESGSLTDSDSGTKSDNSLDSKSQAGGKDQKHIDHVQKNAEDQSPLNVENELPLEHRKKREELDMVEEALPKENGVRRSNGIGANHRSDRSEERQPDVVDDHPGKSRSQSISPKRAVSKSMSISPRGGNRSPSPDKSLSRSPSRSRSPPAPSRRSLSRSPVRSISRSPVRQTSRSPDRSISRSPVRVRKGRSVSRSPIRTRNHRSISRSSGRIRDRSVSRSPVRTRDRRSISRSPVRNRDRRSISRSPVRARDRGSVSRSPVRSHSRSHRSRSSPRPPPRRTISRSPVRGSRKSISRSPVRSPARSLSRSSGRVPLRSVSRSPVRAPSRSDRRSYSRSRSPVRRTRTPRGRSVSRSVSPDASPKRIRRGRGFSERYSYARRYKTPSRSPVRSYRYNGRSDRDRYSGYRRYSPRRYRSPPPRARTPPRYRGRRSRTPVSRSPRYRSRRYSRSRSPIRSRSPVEPYRAHVSPRVERRMSSSRSRSPSRSRSSVESQSPRKASRINRSRSSSGSPNGKKGLVSYEDGSPDSSPR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271933g00017 819 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 397 468 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 713 741 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 576 605 - -
Stsc271933g00017 819 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 649 669 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 339 362 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 181 197 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 251 286 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 476 495 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 296 312 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 313 327 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 371 396 - -
Stsc271933g00017 819 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Stsc271933g00017 819 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 Gene3D - 1 176 IPR029000 -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 496 548 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 770 803 - -
Stsc271933g00017 819 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 181 819 - -
Stsc271933g00017 819 MobiDBLite consensus disorder prediction 682 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271933g00017 Stsc-Chr271933 129683 137524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271933g00017 26 170 U-box Gene Family AT5G67530 39.456 1.77e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271933g00017 K09566 - qsa:O6P43_019424 583.948