Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271933g00015 ATGGAATCTCCAGAACCTTCGAAGAACAATGCAACTTCTTCAGCCTCCACAATCAGCGCCGTCGCCGTCAATGACTCTCCTCAAGTACAGGAATCACCCTTTTTCAGGTTTGTAAACAACTTATCTCCTATAAAGCAACCTGCCAAGACTTCTCATGTGGCACAAGGGTTTGTCGGACTCAATTCTCCGCCTCTTGTGTTCACGTCGCCACGTATTAGTTCTCACCGTGAAACACACTTATTAGAAAGACCTTCACGTGCTCAGTCATCTGGTCGAGTAAAGTCTCAAAGTGACAATAGAGGCAAGACAATTGAAGCTCCTGGTGATTCTGCGAATTCAACTGTTGATCTTCCACCTGCAGGGGAGTTTATAGCTGAATCAGTGAAGGATTTTGATGTCAGAAATAATGCAACAAGCCAACACCTCAGTCCGCCGCCATCTGTTGATAAATATCTGGTTGATCCTGCGGATATTGATCAAATGTACTCTGTCAACCCAGATGAAAAACAACCTAAAGATACGGAATCATCGCTTAGTAACTTAGCTCAATCAAAGAAAAGTATATCAGAAGTTGACAGAAAAGATGATCTTCATGATAATGCAGATAAACCTTTAGAGGAACTTGATAAGGCTCAAACAGGGCCAGCATATGTTGAAGGACAGGGTCAAATATCAGGGGAGAAAAATGACGTTTTAATGGCTTTGCACAAGCGCATGAAGGATCATAATGACTGTACGTCTCAGTTGCCTCCGGAACAGACTCTGCAGGATGTTAAAGATTGGGAAGATTGTGATGAGATGGTGTCAACCTCACATGTAGGTGCTGAGAACGTGTCACAAGATGCGTCTGAGGCTACTCTAAAGTATCATGGCCTTCGAAGGCGGTGCCTACAATTTGAGGAGGCTGCATCTAATGCTCTTGGAAGTGGTAAATCTTGTATGAAATCAAATGCTCCTCCAAGCAAAATAAAAATGGTCAAGCTGTGTGAACCTGTCACTGCTTCTGTGTTTCCTCAAAAATGTAGTGGAAACTCAACTGTGACATGTCCCAAGCCATCAGGTATTGGGTTGCATTTAAATAGCATTGTAAATGCTATGCCTCCTAGTTGTGGTGCAACTACTGGTATGAGATCATCAAATAATTTACAAGGGATGAAATCTGCATCGATTAGCATACATAAAGTGGAGAACAAGAAGGGATGCCTAATTTTGTCAAATATAGACATGCAATCATTAGTTGATACTGGAAATGAGAGCCAAGCCAACAATTCCTCACTAGCCGTAGATTCTTTCATTTCTGGGTCTCCTAGCCTTACAGAACCTGTTGCTTTATGTCCTGAAAGTGTCCATGATAAGAGGAAACTAAGCCCTACAGATGATGGAAATCTTCAGGAATCCAAGCAACCTAGCCCCATCAAGAAAAAGAAGAGAGCATCAAGCAACAGTGATGATAATGGTTGTAAGAGGTGCAACTTTATTGTGATTGTTTCGCTGCTGGAATCTATTGTGCTGATGATTGTTCTTGCCAAGGAGGATGCAAATTTGATGACACCTTCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCAGAAAAAATATTGCGAATGTTATCAGGTTGGTGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATATCTATGGCACAAAAGAAGATTATGTTGCAAGGGATCATGTTTCAAATAAAGAAAGGATGGTTAGCAGGATTGCAAATGAACCAGATGGTGCTTTCCTCAACAAACTGGAAATGGTGGCAACCAAGTCAGATTTGTATGACGCGCCCCATCTCTCACCTTTAACACCGTCATTGCAATGCTCTGACCAAGGAAAGGAGGCTGCAAAATTCCAACTTCATTCTGGGCAGCATCTACCCTCCTCTGAAACTGATGTTGATATGCTTCCATCAAGTGAAAATTATAAGTCTCTAGAGAACTCGCGCAGTATTCTCGCAAATCCGGAAACAAATGAGACATTGGAAACTGCTTCCTATGATTGGCAAGTGGATTGCAGCGATGTAATGGATCAATCATCACCATGTGATTTAGTTGCCAACATACTTCAGGTTATTCCGCTGTCAAATCCTGAGTCAATGTCTAGTGCTTCATTGTTCACATCTAGTACAAAGGAGTGCGGAAACATTCCTCAATCCCAATCGCAAGGACGCATTCGCGTAATATCTGGGAGCTCTCTTCGTTGGCGTGGTTCACCAAATACCCCAAGGGCTAGATTAGGTGTAAAACATCTGCAGTCTCTTGAGTCCGAAAGCAGGCTTTTTGACATAATGGAAGATGAAACACCAGATGTATTGAAGGAAGGTTTAACGCCCACCAAGTCTGTGAAGGCAAATTCCCCAAACCAGAAGCGAGTTTCTCCTCCGCATAGTCATCTACGCGGACTTGGTTCAAGCTCCTCCGGAGGCTTTAGAACTGGCAGGAAATTTATACTGAAATCTGTTCCTTCCTTTCCCCCATTGACACCTTGTGTTGATTCCAAAGGTAATAGTTCCAAAGGTAATAGCAGCGAGGATTTAGGTAACAATGCCAAGTAA 2589 0.4272 MESPEPSKNNATSSASTISAVAVNDSPQVQESPFFRFVNNLSPIKQPAKTSHVAQGFVGLNSPPLVFTSPRISSHRETHLLERPSRAQSSGRVKSQSDNRGKTIEAPGDSANSTVDLPPAGEFIAESVKDFDVRNNATSQHLSPPPSVDKYLVDPADIDQMYSVNPDEKQPKDTESSLSNLAQSKKSISEVDRKDDLHDNADKPLEELDKAQTGPAYVEGQGQISGEKNDVLMALHKRMKDHNDCTSQLPPEQTLQDVKDWEDCDEMVSTSHVGAENVSQDASEATLKYHGLRRRCLQFEEAASNALGSGKSCMKSNAPPSKIKMVKLCEPVTASVFPQKCSGNSTVTCPKPSGIGLHLNSIVNAMPPSCGATTGMRSSNNLQGMKSASISIHKVENKKGCLILSNIDMQSLVDTGNESQANNSSLAVDSFISGSPSLTEPVALCPESVHDKRKLSPTDDGNLQESKQPSPIKKKKRASSNSDDNGCKRCNFIVIVSLLESIVLMIVLAKEDANLMTPSSARHKRGCNCKRSMCQKKYCECYQVGVGCSSGCRCEGCKNIYGTKEDYVARDHVSNKERMVSRIANEPDGAFLNKLEMVATKSDLYDAPHLSPLTPSLQCSDQGKEAAKFQLHSGQHLPSSETDVDMLPSSENYKSLENSRSILANPETNETLETASYDWQVDCSDVMDQSSPCDLVANILQVIPLSNPESMSSASLFTSSTKECGNIPQSQSQGRIRVISGSSLRWRGSPNTPRARLGVKHLQSLESESRLFDIMEDETPDVLKEGLTPTKSVKANSPNQKRVSPPHSHLRGLGSSSSGGFRTGRKFILKSVPSFPPLTPCVDSKGNSSKGNSSEDLGNNAK 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271933g00015 862 ProSiteProfiles CRC domain profile. 517 562 IPR005172 -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 841 862 - -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 783 862 - -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 187 209 - -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 162 225 - -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 449 484 - -
Stsc271933g00015 862 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 525 559 IPR005172 -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 67 121 - -
Stsc271933g00015 862 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 511 845 IPR044522 GO:0003700
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 469 483 - -
Stsc271933g00015 862 SMART CXC_2 522 563 IPR033467 -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 790 822 - -
Stsc271933g00015 862 MobiDBLite consensus disorder prediction 84 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271933g00015 Stsc-Chr271933 113040 118494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271933g00015 763 840 CPP Transcription Factor Family AT3G22780 42.857 3.42e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc271933g00015 TCR 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271933g00015 K21776 - gmx:547664 693.345