Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271932g00016 ATGGAGATGATAAATTGTTCAAGCATTGAGTATCCCAGCTTCTTTGGGTGGTGTATTGACGGATCTCATAGGCAACTTATCAAGCAATCTTTTTTGGCTTCTATGGGGTTCAATCAAATATCTGGAAGGATACCTGATGGAATTGGAAAACTAATCAACCTAACAACGCTTGACCTTTCTAAAAACAACTTCTCAAGCATAATTCCGCATGAACTTGTGAATCTCACGTTGTTGAGTTCTTTGAATTTATCTTTCAACCATCTCTCTAGTGAAGTCCCGGTAGGAGGGTTATTTAATAATGTCACAGCAATATCACTCACCGGAAATAAAGATCTTTGGGGTGGGATTCCTCAATTGAATTTTCCTCCATGCCCTGTGTCGCCTTTACAGAAGAAACACAAGAGATCTATTAGGAAGAGAGTCATCCTCAGCATTGCATTTGGAGGGGTTCTAATCACTTTTGTGACTTTTATCGGTTTCCTATGGAGAGCTACATCAAGCAACCAATGGATTTTCTTCATCCAATTTAGTTGGCACTGGAACTTTGGTGCTGTGTATAGAGGAACACTTGTCCAATTTGAGAGGCCTGTAGCTGTGAAGGTGTTGAATCTTCAAACGCGTGGGGCATCAAAGAGTTTTGTGGCCGAATGCAAACCTCTAGGAAAAATCAAGCACAGAAACCTTGTTAGCATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGGAATGATTTCAAGGCCTTAGTGATTGAGCTCGTGTCAAATGGGAGTCTAGAAACCTTGTCGCACAACAACGCTGAAGATGGCGAGTCCACAAATCTGTGTCTCAACCTTATACAAAGGGTAAATATTGCTCTTGATGTAGCTTTCACATTGGATTATCTTCCCAATGATTCATGGGAAGCTGTAGTTCATTGTGATATTAAGCCAAGCAATGTTCTACTTGATGATGACATGATTGCCCATTTGGGAGACTTTGGATTAGCTAGACTCGTTCATGATGCCGCAAGCCATTCTAGCAGTCATCAAGCTAGCTCCTCTGCAATTAAGGGAACCATTAGATATATTCCACCAGAATATGGAGCAGGCGGCTCAGTGTCAATAGAGGGAGACATGTATAGCTATGGAATTCTTCTTCTGGAGATGATCACTGGTAAGAAGCCAACTGATAGTATGTTCGGTGAAGGTCTAAGCCTACACATGTTCGGTAACATGGCAATTCCAGAAAGAATCACTGAGATTGTTGATTCAAGATTGCTCATTCCATGGTCAATTGATGAACAAGAAACAAGGGTCACACAAGACAGCAAAATATGGAAGAGAACTTTACTGAGGAGTGTGTAG 1344 0.4107 MEMINCSSIEYPSFFGWCIDGSHRQLIKQSFLASMGFNQISGRIPDGIGKLINLTTLDLSKNNFSSIIPHELVNLTLLSSLNLSFNHLSSEVPVGGLFNNVTAISLTGNKDLWGGIPQLNFPPCPVSPLQKKHKRSIRKRVILSIAFGGVLITFVTFIGFLWRATSSNQWIFFIQFSWHWNFGAVYRGTLVQFERPVAVKVLNLQTRGASKSFVAECKPLGKIKHRNLVSILTCCSSVDYKGNDFKALVIELVSNGSLETLSHNNAEDGESTNLCLNLIQRVNIALDVAFTLDYLPNDSWEAVVHCDIKPSNVLLDDDMIAHLGDFGLARLVHDAASHSSSHQASSSAIKGTIRYIPPEYGAGGSVSIEGDMYSYGILLLEMITGKKPTDSMFGEGLSLHMFGNMAIPERITEIVDSRLLIPWSIDEQETRVTQDSKIWKRTLLRSV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271932g00016 447 Gene3D Transferase(Phosphotransferase) domain 1 253 442 - -
Stsc271932g00016 447 SUPERFAMILY Protein kinase-like (PK-like) 181 402 IPR011009 -
Stsc271932g00016 447 Pfam Leucine rich repeat 45 88 IPR001611 GO:0005515
Stsc271932g00016 447 Gene3D Ribonuclease Inhibitor 12 133 IPR032675 -
Stsc271932g00016 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Stsc271932g00016 447 Pfam Protein tyrosine and serine/threonine kinase 181 396 IPR001245 GO:0004672|GO:0006468
Stsc271932g00016 447 ProSiteProfiles Protein kinase domain profile. 171 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271932g00016 447 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 253 443 - -
Stsc271932g00016 447 SUPERFAMILY L domain-like 35 110 - -
Stsc271932g00016 447 ProSiteProfiles Leucine-rich repeat profile. 53 74 IPR001611 GO:0005515
Stsc271932g00016 447 SMART serkin_6 181 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271932g00016 447 PANTHER OS04G0122200 PROTEIN 34 419 - -
Stsc271932g00016 447 Gene3D Phosphorylase Kinase; domain 1 176 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271932g00016 Stsc-Chr271932 105948 108179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271932g00016 11 93 Receptor kinase-like Gene Family AT3G47570 34.579 1.24e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc271932g00016 PK_Tyr_Ser-Thr 7.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271932g00016 - - ahf:112766919 528.48