Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271932g00004 ATGTTGGAAGAAGAACCAAAAATAAGCAATAAGCCCTCCGCCGCCGCCGCCGGCGGCACGCCTGCTCGGAGAGCCTATTCCCGTTCAGTTTCGTGGACGGACAGGTCTCCGAGCAGCCGCCACAAGCCACCACCACAACCACCAAACACAAAGCCAAGGCCATTTCTGCCCCCTCTTCTGCCGCTTGCCATAAGCAAGCGAAGCGCCGAGGAATGGCCAAGCGCGGGATCAGACGATCTCGGCGTTTGGCCAATTCCTCAAACACCAAGAGGAGGAGGAGGGTCCACAAAAGAATTTCAGTTCAAGAGAGACAAACTTGCCTTCTTTGACAAGGAATGTTCTAGAATCGCGGAGCATATATACTTAGGAAGCGACACCGTTGCCAAGAACCACGAGCTACTCAGACAAAACGGAATCACTCATGTCTTGAACTGCGTTGGTTACGTTTGTGCAGAGTATTTCAAAAAAGACTTTGTTTATAAAACCCTCTGGCTTCAGGACAGTCCTTCAGAGGACATAACAAGCATTCTCTATGACGTGTTCGATTATTTTGAAGATGTTCGAGAGCAGGGCGGCCGCGTCTACGTCCATTGCTGCCAGGGCGTTTCGCGGTCGTCCTCTCTCGTCATCGCCTACCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTCCAGTATGTCAAGAATGCAAGGGGAGTAACCAATCCAAACATGGGCTTTGCATGTCAACTCCTTCAGTGTCAAAAGAGGGTCCACGCTATGCCAGCAAGTCCTAATTCCATCCTAAGGATGTACAGAATGGCGCCTCATTCGCCGTACGATCCTCTTCATTTGGTGCCAAAGACGGTTAGCCAGCCGGGCGCCAAAGCTCTAGATTCTCGTGGAGCTTTTCTTGTCCATGTTCCATCAACTATCTATGTTTGGATTGGTAAGAACTGCAGCCCGGTGATGGCTTCGGACGCTAGAGGTGCTGCGCTTCAGGTAGTCCGGTATGAGAGGGCTAAGGGTCCGATTTTGAAGATCCATGAAGGTGAGGAAGTACCTCAGTTTTGGACTGCTCTGTCTTCGGGTGATTCTGAGAAAGAAGAGGTGGAAATAGGCCAGATGGCTGATATTGGTGCAAGAAAAGTTGGGGATTATGATTTGGATTTTGAGATCTTTTACAAGGCAGTCGCCGGCGGGGTTGTCCCGCCTTTTTCTGTGTCTAGTGCAGGGCCGGAGACTTGCTTGCCGGTGAGCGAGCGCGGATGGGGAATACTGAGGCGGAAGCTTGCTACTGGAGTCATGAAAGAGTTGCTTAGCTCTCCCAAATTAAGTTCTGGTGATACTGAAGTTGAACCTTTGTCACCGTCATCAAATCATTCCTTTGAATGTTATTTGAATGATGATAATAAGAATTCAGAAGCAAAAGTAGTGGAAGAGGCTTCTGAAGCCATGGACTCATCGCCGTCTTCTATTTCTGGTGTTGCTTCAAATTCTTTTCCATGGAACAAATCGCCGACGCTTTCACCTTCCAGTTCCGATTATGCCAGCTCGTTCACGTTTTCGCCTTCCTCTGCCAATTGGTCTGATTTGTCATTTGTGTCATCTAGGCAGCCATCACCATCTGGAATGGAATCAACCACCGAAGACGCGCCTTTAGCTGAGAGTAGTTCCTGGTTGCTTCATAAAGAAGTCACCTCAACACCCGAAAAGTTTTTGGCGGCTAACCATGGTTTGGGAGCCGCGAGCTCCTATTTCCAGATGAAAGGATCCTCCCCCTCAATAGCAGAGCGCCGGGGCAGTAACCCGTTGCCTCGAGTGCTGCTATCGTCCATTAATGAATCATCTCAGGTCCACAAGAACATGGAGGATTGCATGTATATTAACATATGA 1878 0.4936 MLEEEPKISNKPSAAAAGGTPARRAYSRSVSWTDRSPSSRHKPPPQPPNTKPRPFLPPLLPLAISKRSAEEWPSAGSDDLGVWPIPQTPRGGGGSTKEFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGYVCAEYFKKDFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVYVHCCQGVSRSSSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKTVSQPGAKALDSRGAFLVHVPSTIYVWIGKNCSPVMASDARGAALQVVRYERAKGPILKIHEGEEVPQFWTALSSGDSEKEEVEIGQMADIGARKVGDYDLDFEIFYKAVAGGVVPPFSVSSAGPETCLPVSERGWGILRRKLATGVMKELLSSPKLSSGDTEVEPLSPSSNHSFECYLNDDNKNSEAKVVEEASEAMDSSPSSISGVASNSFPWNKSPTLSPSSSDYASSFTFSPSSANWSDLSFVSSRQPSPSGMESTTEDAPLAESSSWLLHKEVTSTPEKFLAANHGLGAASSYFQMKGSSPSIAERRGSNPLPRVLLSSINESSQVHKNMEDCMYINI 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271932g00004 625 SMART VILL_6 264 358 IPR007122 GO:0051015
Stsc271932g00004 625 MobiDBLite consensus disorder prediction 40 58 - -
Stsc271932g00004 625 SUPERFAMILY Actin depolymerizing proteins 258 364 - -
Stsc271932g00004 625 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 171 232 IPR000387 GO:0016311|GO:0016791
Stsc271932g00004 625 Gene3D Severin 264 363 IPR029006 -
Stsc271932g00004 625 CDD DSP 113 247 - -
Stsc271932g00004 625 MobiDBLite consensus disorder prediction 437 461 - -
Stsc271932g00004 625 Gene3D Protein tyrosine phosphatase superfamily 95 254 IPR029021 -
Stsc271932g00004 625 MobiDBLite consensus disorder prediction 527 546 - -
Stsc271932g00004 625 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 103 254 IPR029021 -
Stsc271932g00004 625 MobiDBLite consensus disorder prediction 1 58 - -
Stsc271932g00004 625 MobiDBLite consensus disorder prediction 72 96 - -
Stsc271932g00004 625 Coils Coil 622 625 - -
Stsc271932g00004 625 SMART dsp_5 112 251 IPR020422 GO:0006470|GO:0008138
Stsc271932g00004 625 ProSitePatterns Tyrosine specific protein phosphatases active site. 196 206 IPR016130 GO:0016311|GO:0016791
Stsc271932g00004 625 ProSiteProfiles Dual specificity protein phosphatase domain profile. 112 254 IPR020422 GO:0006470|GO:0008138
Stsc271932g00004 625 MobiDBLite consensus disorder prediction 436 461 - -
Stsc271932g00004 625 Pfam Dual specificity phosphatase, catalytic domain 120 250 IPR000340 GO:0008138|GO:0016311
Stsc271932g00004 625 PANTHER MKPA PROTEIN 21 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271932g00004 Stsc-Chr271932 34306 37110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271932g00004 10 147 Protein tyrosine phosphatase (PTP) family AT3G55270 46.104 3.43e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271932g00004 - - lja:Lj6g3v0574850.1 776.933