Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271929g00023 ATGTCTATCACTTCCTTCAAATCCCTAACTACCATGGCTGCAGAGTCATGCCTTCTCTCTCCTCCTTCCTCTCTCTTCCACTCCAAACCCCTCACCTCCTCTCTCAATTCCAAACACCACCACTCTCACTCTCTCTTCCCCAAACTCCCTCCATTCCCTTCCCTCTCTCTCTCTCTCGCCGCTCGCCGCCATCACGTGCTCACTCACGTGGCGCAAACCTCCGACTGGGCTCAGCAAGAGGAAGACAACACTCTCACCTTGGAACAAGAACAAGAACAAGAAGCTTCTCTCTCCGATTGGGAACCTAGTGCTGAAATCGCAGGCGAACCTGAAGTTGAAGTTTCTGAACCCGAAGAAGAAGACGAAGAAGGAGAAGAAGAAGGAGGGGATTTTGCTGAGCCACCGGAGGAAGCGAAAATCTTCGTCGGAAACTTGCCTTACGACGTCGATAGCCAGAAACTCGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTTATTTATAACAGGGACACTGACCAGAGTCGCGGGTTTGGCTTCGTGACGATGAGTACTGTCGAGGAAGCTGAGACCGCCGTGGAGAAGTTCCACCGCTATGATTTAGGTGGAAGACTGTTGACTGTTAACAAGGCTTCTCCAAGAGGAGAGCGACCTGAACGTCCACCACGTGCATTCGAACCCGCTTTTAGGATCTATGTTGGTAACTTGCCATGGGATGTTGACAATGCTCGCCTGGAGCAGATATTCAGCGAACACGGTAAGGTTGTGAATGCTCGCGTAGTTTACGACAGAGAGAGTGGCCGATCACGCGGCTTTGGCTTTGTCACAATGACCGACGAGAGTGAAATGAACGATGCAATTGCAGCTCTTGATGGCCAGAGTTTGGATGGAAGGGCAATAAGAGTGAATGTTGCTGAGGACAGACCCAGACGCTCCTTTTGA 951 0.511 MSITSFKSLTTMAAESCLLSPPSSLFHSKPLTSSLNSKHHHSHSLFPKLPPFPSLSLSLAARRHHVLTHVAQTSDWAQQEEDNTLTLEQEQEQEASLSDWEPSAEIAGEPEVEVSEPEEEDEEGEEEGGDFAEPPEEAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAETAVEKFHRYDLGGRLLTVNKASPRGERPERPPRAFEPAFRIYVGNLPWDVDNARLEQIFSEHGKVVNARVVYDRESGRSRGFGFVTMTDESEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271929g00023 316 FunFam 31 kDa ribonucleoprotein, chloroplastic 222 316 - -
Stsc271929g00023 316 CDD RRM2_NsCP33_like 233 308 - -
Stsc271929g00023 316 Gene3D - 222 315 IPR012677 -
Stsc271929g00023 316 Gene3D - 68 221 IPR012677 -
Stsc271929g00023 316 SUPERFAMILY RNA-binding domain, RBD 224 314 IPR035979 GO:0003676
Stsc271929g00023 316 CDD RRM1_PSRP2_like 139 218 - -
Stsc271929g00023 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Stsc271929g00023 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 304 IPR000504 GO:0003723
Stsc271929g00023 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Stsc271929g00023 316 SMART rrm1_1 139 212 IPR000504 GO:0003723
Stsc271929g00023 316 SMART rrm1_1 233 306 IPR000504 GO:0003723
Stsc271929g00023 316 MobiDBLite consensus disorder prediction 111 132 - -
Stsc271929g00023 316 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 221 - -
Stsc271929g00023 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Stsc271929g00023 316 PANTHER OS02G0815200 PROTEIN 27 314 - -
Stsc271929g00023 316 MobiDBLite consensus disorder prediction 72 135 - -
Stsc271929g00023 316 MobiDBLite consensus disorder prediction 72 98 - -
Stsc271929g00023 316 SUPERFAMILY RNA-binding domain, RBD 134 226 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271929g00023 Stsc-Chr271929 123222 125809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271929g00023 125 314 Eukaryotic Initiation Factors Gene Family AT3G16380 35.961 5.62e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271929g00023 - - adu:107478884 448.743