Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271929g00019 ATGGCTACACAAAATCAAAATCCTTTGTTCTTGCTTCTATTTCTCTTCTTGTTATTCTCTTCAGTCATCAAAGCCAAGCTTGATCTCCACCCTTCAGATTTCAAAGCCTTTAGAACCCTCCAAACAAACCTTGGTCTCAACACAGTTTTAGTCAACGCTGGTCAACGCCCATGCTCCATCAATGGCGTCTTTTGTGAGAGAAGACTCTCCAACAATGGCACAGCCACATCCACCTACTTCCTCCGCATCACTCGCCTTGTCTTCCCCTCCAAGAATCTCCACGGATCCCTCTCGTCCGCCATTGGAGAACTCACGGAGCTTAAAGAACTCACTCTCTCAAACAACCACATCGTTGACCGCATCCCATCCGCCATAGTCAACCTTAAAAACCTCGAAATCCTTGACCTCGGCAACAATGGCTTCTCCGGCGAAGTCCCCGCTCACCTTTCTTCCCTCGCAAGGCTCCGAATCCTCGACGTCTCCGACAACAAACTCTCTGGCAACCTTAACTTCCTCAAGTATTTTCCCAACATGGAAAAGCTTAACATCGCCAACAACCTCTTCGTTGGCCACGTCCCCCTCGCTATCCGCTCGTTCCGAAACCTCCGACAGTTCAACTTCTCTGGCAATAGTTTCCTCGAAAGCTCAACAGAGCTCGCAAAGACTTTCCCCGGTGAAGAAGACTTTCATTCCGTCATCCCAAGACGCTTCATCTTCTTTGAGGACAACGAAGAGAGTAACAATGGTGAAGAAGCCGCCCGTGCGCCATCTCCAGGAATATCATACAAGAAGAAAAGGAGAAACTATTACTCTACGACTTCTTCTCCGGCACCGGCACCGGCGGCACACCACCACCACCACCACAATAAGAGGAAGATTTTGGGATGGATTCTTGGTTTCGCGGCCGGAGCCTTCGCAGGGACGATAACTGGTTTCATATTCTCGTTGCTTTTCAAAGTGACAATGGCGATGGTGAAACGAGGAAGGAAAGGCGGCGCTGGCCCGGATATCTTTAGCCCTTTGATCAAGAAAGCCGAGGATTTGGCATTCTTGGAGAAGGAAGACGGTTTAGCGAACTTAGAACTCATCGGAAAAGGAGGTTCTGGTGAGGTTTTCAAGGCGGAGTTGCCCGGAAGTGATGGAAAGATTATTGCTATCAAGAAGATCATACAGCCTCCAAGGGACATTTCTGAAATGGCTGAGGAAGATAGCAAATTGTTGCACAAAAAGATGAGGCAAATTCGATCGGAGATCAATACAGTTGGGCATATTCGCCATAGAAATCTGTTGCCTCTTCTTGCTCATGTTTCCCGCCCTGATTGCCACCTCTTGATTTACGAGTTCATGAAGAATGGAAGCTTGCAAGATTTGCTGAACAGAGTTCAAGCTGGAGAGGCGGAGTTGGATTGGTTATCAAGGCACAGGATCGCAATCGGAGTCGCCGCAGGACTTGAATACCTTCACATGAATCATACTCCTAAAATCATTCATAGAGACCTTAAACCAGGAAATATTCTTCTTGACGATGATATGGAGGCTAGGATAGCGGATTTTGGGCTCGCGAAAGCGATGCCTGATGCACAAACGCACATTACTACTTCCAAAGTCGCCGGCACCGTTGGTTACATTGCGCCGGAGTATCACCTGATATTTAAGTTCAGTGATAAGTGTGACATTTTTAGCCTTGGTGTAGTGCTTGGTGTTTTAGTGACTGGTAAGTTTCCTTCGGATGATTTCTTTCAACACACAGATGAGATGAGCATAGTGAAGTGGATGAAGAAGATTATAATCTCAGAAAATCCAAAGGAGGCGATAGATCCAAAGCTTATTGGGAATGGTTTTGAGGAGCAAATGCTTCTTGTTCTTAAGATTGCTTGCTTTTGCACCATGGATGATCCTAAGGAGAGGCCTAATAGCAAGGATGTTAGGTGTATGTTAGCTCAAATCAAGCATTGA 1956 0.4663 MATQNQNPLFLLLFLFLLFSSVIKAKLDLHPSDFKAFRTLQTNLGLNTVLVNAGQRPCSINGVFCERRLSNNGTATSTYFLRITRLVFPSKNLHGSLSSAIGELTELKELTLSNNHIVDRIPSAIVNLKNLEILDLGNNGFSGEVPAHLSSLARLRILDVSDNKLSGNLNFLKYFPNMEKLNIANNLFVGHVPLAIRSFRNLRQFNFSGNSFLESSTELAKTFPGEEDFHSVIPRRFIFFEDNEESNNGEEAARAPSPGISYKKKRRNYYSTTSSPAPAPAAHHHHHHNKRKILGWILGFAAGAFAGTITGFIFSLLFKVTMAMVKRGRKGGAGPDIFSPLIKKAEDLAFLEKEDGLANLELIGKGGSGEVFKAELPGSDGKIIAIKKIIQPPRDISEMAEEDSKLLHKKMRQIRSEINTVGHIRHRNLLPLLAHVSRPDCHLLIYEFMKNGSLQDLLNRVQAGEAELDWLSRHRIAIGVAAGLEYLHMNHTPKIIHRDLKPGNILLDDDMEARIADFGLAKAMPDAQTHITTSKVAGTVGYIAPEYHLIFKFSDKCDIFSLGVVLGVLVTGKFPSDDFFQHTDEMSIVKWMKKIIISENPKEAIDPKLIGNGFEEQMLLVLKIACFCTMDDPKERPNSKDVRCMLAQIKH 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271929g00019 651 Gene3D Ribonuclease Inhibitor 31 235 IPR032675 -
Stsc271929g00019 651 Gene3D Transferase(Phosphotransferase) domain 1 449 650 - -
Stsc271929g00019 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 650 - -
Stsc271929g00019 651 SMART serkin_6 357 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271929g00019 651 ProSiteProfiles Protein kinase domain profile. 357 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271929g00019 651 Pfam Protein kinase domain 359 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271929g00019 651 FunFam Leucine-rich repeat receptor-like protein kinase 449 651 - -
Stsc271929g00019 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Stsc271929g00019 651 ProSitePatterns Protein kinases ATP-binding region signature. 363 388 IPR017441 GO:0005524
Stsc271929g00019 651 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 78 169 - -
Stsc271929g00019 651 SUPERFAMILY Protein kinase-like (PK-like) 353 646 IPR011009 -
Stsc271929g00019 651 Gene3D Phosphorylase Kinase; domain 1 346 448 - -
Stsc271929g00019 651 SUPERFAMILY L domain-like 57 215 - -
Stsc271929g00019 651 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271929g00019 Stsc-Chr271929 98435 100390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271929g00019 8 651 Receptor kinase-like Gene Family AT2G31880 59.601 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Stsc271929g00019 Pkinase 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271929g00019 - - aip:107629358 944.88