Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271929g00018 ATGGCTACACAGAATTCTTTCTTCTTGTTTCTCTTTCTCTTCTTGTTATTCTCTTCAATCATCAAAGCCAAGCTTGATCTCCACCCTTCAGATTTCAAAGCCTTTAGAACTTTCCAAACACACCTTGGTCTAAACACAGTTTTAGTCAACGCTGGTCAACGCCCATGCTCCATCAATGGCGTGTTCTGCGAGAGAAGACTCTCCAACAATGGCACAGCCACAACCACCTACTTTCTCCGTATCACACGCCTTGTTTTCCCCTCCAAGAATCTCCATGGATCCCTCTCTTCCGCCATTGGAGAACTCACCGAGCTTAAAGAACTCACTCTCTCAAACAACCACATCGTTGACCGCATCCCATCCACCATAATCAACCTTAAAAACCTCGAAATCCTTGACCTCGGTAACAATGGCTTCTCCGGTGAAGTCCCGGCTCAGCTTTCTTCTCTCACAAGGCTCCGAATTCTGGACATCTCCGACAACAAACTCTCCGGCAACCTTAACTTCCTCGAGTATTTTCCGAACATGGAAAAGCTCAACATCGCCAATAATCTCTTCGTAGGGCATGTCCCTCTCTCTATTCGCTCGTTCCGGACCTCCGACAGTTCAACTTCTCTGGTAATAGTTTCCTCCAAGACTCAACAGAGATTGCAAAAAGTTTCATCAGACCAGAAGACTTCCAGTCTTTTGTCCCGAGACGCTTCATCTTCTTGGAGGACAATGATGGCAGCAACGATGGCGAAATCGCGCCCTCTCTGGCTCCCGGACCGACGAGGAAAAGACTCTGACTCTGACTCTGACTCTGACTCTGGCTCTGGCTCTGACTCTGACTCTGGCTCTGGCCTAGATATTTTTAGCCCTTTGATCAGGAAAGCTGAGGATTTGGCATTCTTGGAGAAAGAAGATGGTTTGGAGAATTTGAAACTCATTGGGAGAGGTGGTTGTGGAGAGGTTTACAAGGCCAAGTTTCCAGGAAACGATGGAAAGATGATTGCTATAAAGGTGGTCATACAGCCTCCGAAAGATAATTCTAAATTAACAGAAAGAAATAGCAAATTACCGTTTCTTATGAGGCAAATTCGATCAGAGATCAACACAGTTGGACATATGAGGCATAGGAACCTGTTGCCACTTCTTGCTCATGTGTCCCGACCTGATTGCCACCTCTTAGTTTACGAGCTCATGAAGAATGGAAGCTTGCAAGATTTGCTAAATAGAATTCGAGCGGGAGAGGCCGAGTTGAATTGGTTATTAAGGCACAAGATCGCGGTTGGAGTTGCTTCAGGACTTGAGTACCTTCACATGAGTCATGATCCTAAAATCATTCATAGAGACATTAAACCGGGAAACATTCTTCTTGATGATGATATGGAGGCAAGGATCTCGGATTTCGGCCTTGCCAAAGCAATGTTTAATGCGCAAACTCACGTTTCTACATTCAAAGTGGCCGGTACCGTTGGTTACATTGCGCCGGAATATTACCGGATACTTAAATTTACTGAAAAGAGTGACATTTTCAGCTTTGGGGTGGTACTTGGTGTTTTAGTAACTGGTAAGCTTCCCTCAGATGATTTCTTCCAGCATACGGATGAGATGACTATGGTGAAATGGATGAGGAAGGTTATAATCTCGGAGAATCCGAAGGAGGCAATAGATGGAAAGCTTATTGGGAATGGTTTTGAGGAACAAATGCTTCTTGTTCTTAAGATTGCTTGCTCTTGCACCATGGATGATCCTAAGGAAAGGCCTAATAGCAAGAAAGTTAGGCGTATGTTAGCTCAAATCAAGCATTGA 1794 0.4476 MATQNSFFLFLFLFLLFSSIIKAKLDLHPSDFKAFRTFQTHLGLNTVLVNAGQRPCSINGVFCERRLSNNGTATTTYFLRITRLVFPSKNLHGSLSSAIGELTELKELTLSNNHIVDRIPSTIINLKNLEILDLGNNGFSGEVPAQLSSLTRLRILDISDNKLSGNLNFLEYFPNMEKLNIANNLFVGHVPLSIRSFRTSDSSTSLVIVSSKTQQRLQKVSSDQKTSSLLSRDASSSWRTMMAATMAKSRPLWLPDRRGKDSDSDSDSDSGSGSDSDSGSGLDIFSPLIRKAEDLAFLEKEDGLENLKLIGRGGCGEVYKAKFPGNDGKMIAIKVVIQPPKDNSKLTERNSKLPFLMRQIRSEINTVGHMRHRNLLPLLAHVSRPDCHLLVYELMKNGSLQDLLNRIRAGEAELNWLLRHKIAVGVASGLEYLHMSHDPKIIHRDIKPGNILLDDDMEARISDFGLAKAMFNAQTHVSTFKVAGTVGYIAPEYYRILKFTEKSDIFSFGVVLGVLVTGKLPSDDFFQHTDEMTMVKWMRKVIISENPKEAIDGKLIGNGFEEQMLLVLKIACSCTMDDPKERPNSKKVRRMLAQIKH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271929g00018 597 Gene3D Ribonuclease Inhibitor 34 205 IPR032675 -
Stsc271929g00018 597 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 80 210 - -
Stsc271929g00018 597 Gene3D Phosphorylase Kinase; domain 1 292 394 - -
Stsc271929g00018 597 FunFam Leucine-rich repeat receptor-like protein kinase 395 597 - -
Stsc271929g00018 597 ProSiteProfiles Protein kinase domain profile. 304 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271929g00018 597 SUPERFAMILY Protein kinase-like (PK-like) 296 593 IPR011009 -
Stsc271929g00018 597 MobiDBLite consensus disorder prediction 252 281 - -
Stsc271929g00018 597 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 75 167 - -
Stsc271929g00018 597 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Stsc271929g00018 597 CDD STKc_IRAK 310 595 - -
Stsc271929g00018 597 SUPERFAMILY L domain-like 55 198 - -
Stsc271929g00018 597 Gene3D Transferase(Phosphotransferase) domain 1 395 597 - -
Stsc271929g00018 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Stsc271929g00018 597 SMART serkin_6 304 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271929g00018 597 MobiDBLite consensus disorder prediction 253 267 - -
Stsc271929g00018 597 Pfam Protein kinase domain 305 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271929g00018 Stsc-Chr271929 95084 96978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271929g00018 7 597 Receptor kinase-like Gene Family AT2G31880 51.024 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Stsc271929g00018 Pkinase 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271929g00018 - - qsa:O6P43_022621 657.907