Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271929g00008 ATGTTTATGTTACTTTGTAGGTGTAGGCTTGGATACTTCCATGTGGTGAATAATGACTACACCCATTGGGAGATGTATGCTATTGGAGGAAGTGCAAACCCCACCATCAATAGCCAAGGAAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTGACAAAGCATGAAGATGCACCAGAGAGTGAATGGAAGAATTGGAATTGGAGAACAGAAGGAGATATGCTTGTAAATGGTGCATTTTTCACAGCATCAGGGGCTGCTGGAGCTTCATCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCAAGACCCTCTTCTCTTGTTGCTTCTCTTACTTCTTCTTCTGGTGCTCTTATTTGCAAGAAAGGTTCTCCATGCTAG 384 0.4323 MFMLLCRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWKNWNWRTEGDMLVNGAFFTASGAAGASSSYARASSLSARPSSLVASLTSSSGALICKKGSPC 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271929g00008 127 Gene3D - 5 120 IPR012334 -
Stsc271929g00008 127 SUPERFAMILY Pectin lyase-like 7 127 IPR011050 -
Stsc271929g00008 127 PRINTS Pollen allergen Amb family signature 68 92 IPR018082 -
Stsc271929g00008 127 PRINTS Pollen allergen Amb family signature 4 23 IPR018082 -
Stsc271929g00008 127 PRINTS Pollen allergen Amb family signature 26 45 IPR018082 -
Stsc271929g00008 127 PRINTS Pollen allergen Amb family signature 98 121 IPR018082 -
Stsc271929g00008 127 PANTHER PECTATE LYASE 18-RELATED 6 125 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271929g00008 Stsc-Chr271929 44832 45767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271929g00008 1 127 Polysaccharide Lyase AT4G13710 70.079 1.72e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271929g00008 K01728 - sly:101254471 196.438