Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271929g00007 ATGATGATGATGAGAAGAAGCATTCTATTCTCTTTGCTTTTCTTGGTTTTCTCTTTTCTATTCTTCAGTACCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGTAGAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGAGCTTATTAGCTAGTGGTAGGAGAAACTTGGGGTACCTTTCATGTGGAACCGGCAACCCCATTGACGATTGTTGGAGGTGTGATCCGGATTGGGAAAAGAACAGACAGAAGCTAGCCGATTGTGCAATTGGGTTCGGAAAGGACGCAATTGGGGGTCGGGATGGCAAGATTTATGTGGTAGACGATTTTGGGGACGATGACCCAGTAAACCCTAAACCCGGAACCCTACGTCACGCAGTGATTCAGGACGAGCCGTTATGA 417 0.4676 MMMMRRSILFSLLFLVFSFLFFSTLISSSPVQDPELVVEEVNRQINASIARRSLLASGRRNLGYLSCGTGNPIDDCWRCDPDWEKNRQKLADCAIGFGKDAIGGRDGKIYVVDDFGDDDPVNPKPGTLRHAVIQDEPL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271929g00007 138 PRINTS Pollen allergen Amb family signature 117 138 IPR018082 -
Stsc271929g00007 138 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Stsc271929g00007 138 PANTHER PECTATE LYASE 18-RELATED 31 138 IPR045032 GO:0030570
Stsc271929g00007 138 SUPERFAMILY Pectin lyase-like 71 138 IPR011050 -
Stsc271929g00007 138 Gene3D - 70 138 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271929g00007 Stsc-Chr271929 42449 43958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271929g00007 12 138 Polysaccharide Lyase AT4G24780 70.079 2.00e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271929g00007 K01728 - qsa:O6P43_022613 195.667