Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271929g00001 ATGGCGGAACCAAACGGCGACGTTTTCCAGTGGCTGAAGTCGATGCCGTTGGCGCCGGAGTATAGGCCGACGCTGGCGGAGTTCCAAGATCCGATCGCCTACATTTTCAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAGATCATACCGCCGTTTCCACCGCCGCCGAGGAAGGTTGCAATCGCCAACTTCACTCGCTCGCTCACTAAGCCCGACGAACCGAACTCAAAGCCCACATTCACCACTCGCCAGCAACAGATCGGGTTCTGCCCCCGCCGGCCCAGGCCCGTTCAGAGGCCCGTGTGGCAAAGCGGTGAGAACTATACTTTTCAGGAATTCGAGGCTAAGGCCAAAGCATTCGAGAAGAGTTACCTCAAGAAGCACCACCACCACGGTGGTGGTCACCGGAAGGGAGGAGGAGGAGGAGGTGGTGGTTCCGGTGGCCTAGGGCCTCTCGAGGTGGAGACGCTGTTCTGGAAAGCGACCGTTGACAAGCCGTTCTCGGTGGAGTATGCGAACGACATGCCGGGGTCGGCGTTCAGCCGGAAATGTAGGGAGGAGTGTGCGGCGGCGCTGGCGGAGTCGGCGTGGAATATGAGGGAGATTTCGAGGGCGAATGGTTCGTTGTTGAGGTTCATGAAGGAGGAGATACCTGGTGTTACTTCTCCCATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTCACATGGGTTCTGGTAAGACCTGGTATGGCGTGCCGAGGGATGCTGCTGTGGCGTTCGAAGATGTTGTTAGGGTTCATGGTTATGGCTCAGAGATTAACCCTCTTGTTACTTTTTCTACTCTTGGCGAGAAAAACACAGTGATGTCACCTGAAGTGTTGATAAATGCAGGTGTTCCATGCTGCAGGTTAGTTCAAAATGCTGGGGAATTTGTTGTGACTTTTCCAAGAGCTTATCACACAGGGTTTAGTCATGGTTTTAACTGTGGAGAGGCAGCAAACATTGCAACGCCTGAATGGTTGAGAGTTGCAAAAGATGCTGCTATTCGGAGGGCTTCTGTAAATCATTCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTAGCCTTAGCTTTGTGTTCTAGAATTCCTGAGAGTATCAGTGCTGAACCACGGAGTTCTCGCCTTAAGGATAAGAAGAGGGGTGAAGGGGAAACCGTAATTAAAGAACTATTTGTCCAGGATGTGTCACAGAACAATGATCTGCTTCATGAACTAAGCAAAGAATCTGCGATAATACTTCTACCTCGTAGCTCGTTTGACATTTCTCTTTCCTCAAAATTACGTTCTGGATCGAAACAACGAAAACTGAACTCTCGGTTTTCCCTTAGTGCATGCAATTCCGAGGAAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTGTTCAGTGTGAACAGAGGAATCAAGCAAGAAGGTTTTCTTTCTATAAAAGATAAGATTACTTCATTGTGTGAAAGGAGCAGGATTTCTTCATTTGATGTAAATGGCAACATCTGCCCTTCAAGTTCCAAGCCGCTTCAAAGTGATACTGAAAGAGAAAGTGGCGAAGGGGATGGATCACCAGATAAGAGACTTTTTTCATGCGTCACCTGTGGAATATTATGCTTTCCTTGTGTAGCTATTGTACAGCCTAGGGAGTCTGCTGCTAGATATCTTATGTCAGCTGATTGTAGTTTCTTTAACGATTGGGTTGTTGGTTCTGGAGTATCTAGCAAAAAGTTTATTGCCCATGAAGAAGTGGCTTTTCCTGATTCAAATATGTATGCAGGGTGGACAGAAAAGAAGACCCAAAATGGATTGTATGGGGATCCTGTTCAATCTACCCATTATCAGCTACAGACTGCTGAACGAAATTATGAGGAGTCCCTTAATTCTGATAAAGGAAAAAGCAATACAGCTCTTGCCTTGTTAGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGAGCAGGGTGACTCAGATATTGCAGTTGATGGTCATGAATCACATGTTATTAGCACTACATCAGGAGGATCACCATCTACTTTTCAAGATGCTATTCCCTCGACTGGACCTGATAGCAAAAATGATTTTAGTCATCCATCTTTTGACCACTCTTTTGAAAAGCAGGATTCTGATACTGCTTCAGGACTTGCATTAAAAAATACGAGGGCAATGTGTAATTCCACCTCTAATTGTACCCAAGATGTTCATGATGCTGAAACATCATTGCTGGTCAAGACTATGGTTCCCAATGATAATAAAAATGCTTCATTGATGCCAGAATGTGATGAAGACTCATCTAGAATGCATGTCTTCTGTCTGGAGCATGCTGTTGAAGCACAGCAACAACTTCGCCCAATAGGTGGAGCCAACATAATGCTACTGTGTCATCCAGATTTTCCCAAGATAGAGGCTGAAGCTAAGCTTGTAGCAGAAGATCTTGGGATTGATTACCTGTGGAAGAAGACTGAGTACAGGGATTCCAGCAAGGAGGATGAGGAGAGGATCCAGTTAGCCCTGGATAGTGAGGAAGCTATTCCTGGGAATG 2611 0.4619 MAEPNGDVFQWLKSMPLAPEYRPTLAEFQDPIAYIFKIEKEASKYGICKIIPPFPPPPRKVAIANFTRSLTKPDEPNSKPTFTTRQQQIGFCPRRPRPVQRPVWQSGENYTFQEFEAKAKAFEKSYLKKHHHHGGGHRKGGGGGGGGSGGLGPLEVETLFWKATVDKPFSVEYANDMPGSAFSRKCREECAAALAESAWNMREISRANGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEDVVRVHGYGSEINPLVTFSTLGEKNTVMSPEVLINAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASVNHSPMVSHFQLLYDLALALCSRIPESISAEPRSSRLKDKKRGEGETVIKELFVQDVSQNNDLLHELSKESAIILLPRSSFDISLSSKLRSGSKQRKLNSRFSLSACNSEEMNSSKGFVSDDLVFSVNRGIKQEGFLSIKDKITSLCERSRISSFDVNGNICPSSSKPLQSDTERESGEGDGSPDKRLFSCVTCGILCFPCVAIVQPRESAARYLMSADCSFFNDWVVGSGVSSKKFIAHEEVAFPDSNMYAGWTEKKTQNGLYGDPVQSTHYQLQTAERNYEESLNSDKGKSNTALALLASAYGNSSDSEEEQGDSDIAVDGHESHVISTTSGGSPSTFQDAIPSTGPDSKNDFSHPSFDHSFEKQDSDTASGLALKNTRAMCNSTSNCTQDVHDAETSLLVKTMVPNDNKNASLMPECDEDSSRMHVFCLEHAVEAQQQLRPIGGANIMLLCHPDFPKIEAEAKLVAEDLGIDYLWKKTEYRDSSKEDEERIQLALDSEEAIPGN 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271929g00001 870 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 864 - -
Stsc271929g00001 870 SUPERFAMILY Clavaminate synthase-like 106 358 - -
Stsc271929g00001 870 ProSiteProfiles JmjN domain profile. 18 59 IPR003349 -
Stsc271929g00001 870 MobiDBLite consensus disorder prediction 526 546 - -
Stsc271929g00001 870 MobiDBLite consensus disorder prediction 127 149 - -
Stsc271929g00001 870 MobiDBLite consensus disorder prediction 690 717 - -
Stsc271929g00001 870 Pfam JmjC domain, hydroxylase 226 344 IPR003347 -
Stsc271929g00001 870 FunFam Probable lysine-specific demethylase ELF6 11 366 - -
Stsc271929g00001 870 ProSiteProfiles JmjC domain profile. 193 362 IPR003347 -
Stsc271929g00001 870 SMART cupin_9 193 362 IPR003347 -
Stsc271929g00001 870 Pfam jmjN domain 19 52 IPR003349 -
Stsc271929g00001 870 SMART JmjN_1 17 58 IPR003349 -
Stsc271929g00001 870 Gene3D Cupin 11 367 - -
Stsc271929g00001 870 MobiDBLite consensus disorder prediction 690 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271929g00001 Stsc-Chr271929 1 5569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271929g00001 789 865 C2H2 Transcription Factor Family AT5G04240 36.364 1.23e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc271929g00001 JmjC 1.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271929g00001 - - aip:107632400 1507.27